Hello,
I want to use DiscoFilter of TPP-5 for processing SWATH data (Sciex). Can
anybody send me a sample *DIA Windows File.*
-Kamal
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Hello,
Can anybody help me with the link for downloading the linux version of TPP.
The available recipe of installation doesn't work for me since I cannot use
"sudo" in our cluster. I can install it only in my own space.
-Kamal
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ys
> administrator that you can ask to install those components?
>
>
>
> What version of Linux is your cluster running, do you know?
>
>
>
> Regards,
>
> Eric
>
>
>
>
>
> *From:* spctools-discuss@googlegroups.com <
> spctools-discuss@googlegroups.c
you, then
> this may be difficult.
>
>
>
> Is there Docker available on your machine/cluster? That would make it
> easier.
>
>
>
> Regards,
>
> Eric
>
>
>
>
>
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>
>
> *From:* Kamal Mandal
> *Sent:* Thursday, November
“External Tools->Percolator” from the menu.
> Input is the .perc.txt output files from Kojak.
>
>
>
> Cheers,
>
> Mike
>
>
>
> *From:* spctools-discuss@googlegroups.com [mailto:
> spctools-discuss@googlegroups.com] *On Behalf Of *Kamal Mandal
> *Sent:* Thursd
Hello, is it possible to use PeptideProphet for validation of cross-linked
peptides obtained using Kojak?
Is the windows version of percolator available?
Thanks,
-Kamal
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Hello,
Is it possible to use PeptideProphet for validation of data (Cross-linked
peptides) obtained from Kojak search in TPP.
Is the windows version of percolator available and how do we integrate that
to TPP suite?
Thanks,
-Kamal
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now if that makes any difference.
However, I am getting an error while compiling - "make all".
Please find the attached file containing the error message.
Please suggest the needful.
-Kamal
On Thu, Nov 15, 2018 at 11:28 PM Kamal Mandal wrote:
> Eric,
> I would like to get th
it's not worth the maintenance headache."
-Kamal
On Sun, Nov 18, 2018 at 10:50 PM Kamal Mandal wrote:
> Thanks a lot Eric. I will check that with the administrator and let you
> know.
>
> -Kamal
>
> On Sun, Nov 18, 2018 at 10:46 PM Eric Deutsch
> wrote:
>
>> Hi Kam
can just do:
>
>
>
> xinteract
>
>
>
> Is that what you mean?
>
>
>
> Regards,
>
> Eric
>
>
>
>
>
> *From:* Kamal Mandal
> *Sent:* Monday, November 19, 2018 10:38 AM
> *To:* Eric Deutsch
> *Cc:* spctools-discuss@googlegroups.com
> *Subj
Proteomics Pipeline" to use the shared
> versions. If only because the shared versions are maintained by us, the
> wynton administrators. If the pipeline is statically linked, then it
> should be recompiled/relinked everytime the system is updated. There can
> be a speed advant
Hello, I want to have two constant modification in a particular amino acid.
To be more specific- the concerned amino acid should compulsorily have one
of the two constant modification. Can anyone please suggest me the best way
to do it in comet. In regular search, my understanding is- only one
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