** Changed in: mobyle (Ubuntu)
Status: New = Incomplete
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https://bugs.launchpad.net/bugs/1159334
Title:
package mobyle 1.0.4~dfsg-2ubuntu1 failed to install/upgrade: el
Bug has been forwarded to upstream
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https://bugs.launchpad.net/bugs/1084298
Title:
blastn crashes when using XML output format with infinite max E-value
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** Changed in: mobyle (Ubuntu)
Status: New = Invalid
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https://bugs.launchpad.net/bugs/1167316
Title:
missing dependency
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: (unassigned) = osallou (olivier-sallou)
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https://bugs.launchpad.net/bugs/1167316
Title:
missing dependency
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After a quick install on my Ubuntu (latest mobyle release),
DNS_RESOLVER is False by default in /etc/mobyle/Config.py
So dependency is not an issue.
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available, shutting down
Unable to open logs
Action 'start' failed.
You may have an other web server running or application using apache
port.
** Changed in: mobyle (Ubuntu)
Assignee: (unassigned) = osallou (olivier-sallou)
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** Changed in: ncbi-blast+ (Ubuntu)
Status: New = Confirmed
** Changed in: ncbi-blast+ (Ubuntu)
Assignee: (unassigned) = osallou (olivier-sallou)
** Changed in: ncbi-blast+ (Ubuntu)
Status: Confirmed = In Progress
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I am investigating bug on Debian (see ref), but picard tools has been built on
Debian using libsnappy package.
picard tools build.xml has been patched to use the snappy jar file on Debian
(among other things).
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I just tried to build with pbuilder picard-tools (1.82) and it succeeded
with current libsnappy package in Debian:
...
dh_auto_configure
make[1]: Leaving directory `/tmp/buildd/picard-tools-1.82'
debian/rules override_dh_auto_build
make[1]: Entering directory `/tmp/buildd/picard-tools-1.82'
Hi,
I am maintainer of this package on Debian.
Package build issue looks like a dependency missing issue with:
libsnappy1.0.3-java (from Debian)
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https://bugs.launchpad.net/bugs/1078012
This bug was fixed with bug 670495, and is fixed in release 1.2.0-8
** Changed in: biomaj-watcher (Ubuntu)
Status: New = Fix Released
** Changed in: biomaj-watcher (Ubuntu)
Assignee: (unassigned) = osallou (olivier-sallou)
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logol_1.5.0-5 fixes the build, forcing the 1.5 source compatibility on
Java and using default-jdk.
I tried a build on Quantal and succeeded
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https://bugs.launchpad.net/bugs/1033130
** Changed in: logol (Ubuntu)
Status: Incomplete = Fix Released
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https://bugs.launchpad.net/bugs/1021580
Title:
FTBFS: java errors during tests
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Could you please give me the Ubuntu version, and the used JVM and Swi-
Proloig version ?
Tests are mainly Prolog tests (though some parts are Java too), using
SWI-Prolog.
Could you also attach the the build tests?
** Changed in: logol (Ubuntu)
Assignee: (unassigned) = osallou (olivier
I gonna test and see
** Changed in: mobyle (Ubuntu)
Assignee: (unassigned) = osallou (olivier-sallou)
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https://bugs.launchpad.net/bugs/915275
Title:
installation error of package
** Changed in: biomaj (Ubuntu)
Status: New = Invalid
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https://bugs.launchpad.net/bugs/911705
Title:
biomaj unhappy with openjdk7 and forces openjdk6 installation
To manage
I tried to install it on r12.04 and succeeded.
Could you give me the whole log of install ?
I see InstallationMedia 11.10, is it related to a dist upgrade
operation?
I think there was an issue on upgrades, fixed in the meanwhile in newer
releases.
If this is the case you should remove the
is not
correctly set (should be set in the env.sh at package install).
The fact that application is owned by root is it creates some data in
different directories (logs, /var/lib/biomaj)
** Changed in: biomaj (Ubuntu)
Assignee: (unassigned) = osallou (olivier-sallou)
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Your first steps failed because you were not root, and files could not
be created/updated.
When you say:
4. I have looked in /usr/share/biomaj/bin/biomaj.sh and saw the line:
java -Xmx1024m -jar $BIOMAJ_ROOT/lib/biomaj.jar $@I went there and
execute bimaj.jar directly on terminal as sudoer and
In fact I just saw that it is specified in man page that program need
user to have root access.
So this is not an issue.
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https://bugs.launchpad.net/bugs/915316
Title:
biomaj1.2.0-3
** Changed in: biomaj (Ubuntu)
Assignee: (unassigned) = osallou (olivier-sallou)
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Title:
biomaj unhappy with openjdk7 and forces openjdk6
Current dependency is: openjdk-6-jdk|default-jdk|sun-java6-jdk
so, if default-jdk points to version 7, this is fine but it doesn't.
Default dependency will be kept as default-jdk, which is still
openjdk-6-jdk, even in Precise (http://packages.ubuntu.com/precise
/default-jdk).
I won't use in
I just tried an install of biomaj on Ubuntu 12 (Precise) and it worked fine.
No java issue (as logs seem to show), nor other issue.
I update apt to go to precise, downloaded biomaj pkg from launchpad, installed
dependencies et executed:
apt-get install biomaj (1.2.0-3)
** Changed in: biomaj
a look
** Changed in: biomaj (Ubuntu)
Assignee: (unassigned) = osallou (olivier-sallou)
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Title:
package biomaj 1.2.0-3 failed to install/upgrade
Seems a config issue, I do not face the problem on another host
(identical version).
Issue can be rejected
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virsh requires arch type
https://bugs.launchpad.net/bugs/665180
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Server Team, which is subscribed to libvirt in
Seems a config issue, I do not face the problem on another host
(identical version).
Issue can be rejected
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virsh requires arch type
https://bugs.launchpad.net/bugs/665180
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Public bug reported:
Binary package hint: libvirt-bin
I used virsh to deploy a new VM.
It appears that xml deployment file require the arch type to be set . If not
set, the VM cannot be deployed.
Identical deployment file on a CentOS with older virsh version (qemu 0.12,
libvirt 0.6)
Public bug reported:
Binary package hint: libvirt-bin
I used virsh to deploy a new VM.
It appears that xml deployment file require the arch type to be set . If not
set, the VM cannot be deployed.
Identical deployment file on a CentOS with older virsh version (qemu 0.12,
libvirt 0.6)
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