Re: [Users] Inconsistency warnings: cores/threads mismatch [Leonardo cluster]

2025-09-26 Thread Roland Haas via Users
Hello all, > I never used --cores and I don't know the difference with procs. --cores is a synonym for --procs in simfactory. The hope was to avoid the confusion of "procs" being "Processes" or "Processors". Though it has been pointed out that the best name would actually be "--threads" since tha

Re: [Users] Inconsistency warnings: cores/threads mismatch [Leonardo cluster]

2025-09-17 Thread Roland Haas via Users
Hello Panayotis, "procs" as used by simfactory is (for historical reasons) a misleading term (https://simfactory.bitbucket.io/simfactory2/userguide/processterminology.html). Really "procs" is the total number of threads that will be started, which usually will be the same as total number of (logi

Re: [Users] Issues Running BNS and GW150914 Example Simulations + storing BSSN variables

2025-09-15 Thread Roland Haas via Users
Hello Sandeep, > *BNS: *On running the command ./simfactory/bin/sim create-submit bns > --parfile bns.par --procs= --num-threads= > --walltime=xx:xx:xx > > I encounter the error: WARNING level 1 from host panther process 0 >   in thorn ML_BSSN_Helper, file > /system/user/crangano/einstein_too

Re: [Users] ET build errors (Leonardo DCGP, CINECA cluster)

2025-09-04 Thread Roland Haas via Users
able CCE_Export. OpenPMD as of commit: commit c6ac85d8f63ec4521e77d815035c0361c025614f (HEAD -> master, origin/master, origin/HEAD, origin/ET_2025_05, ET_2025_05) Author: Roland Haas Date: Thu Aug 7 18:26:43 2025 -0700 openPMD: bump version to 0.16.1 this includes fixes for HDF5 and a

Re: [Users] ET build errors (Leonardo DCGP, CINECA cluster)

2025-09-03 Thread Roland Haas via Users
Hello Panayotis, > I removed all CarpetX-related thorns and tried to compile again. > This time, the build complained about thorns GRHayLHDX, GRHayLIDX, and > NewRadX: They are all using CarpetX (the "X" is the giveaway :-) ). > Now the build complains about the CCE_Export thorn. Hmm, that one

Re: [Users] ET build errors (Leonardo DCGP, CINECA cluster)

2025-09-02 Thread Roland Haas
/C-Dialect-Options.html>, and > it seems that there are a number of possibilities. > > Is there some -std=... option that is new enough for CarpetX and > old/standard enough so that older C++ code is also OK? > > > Best, > Panayotis > > > > > __

Re: [Users] ET build errors (Leonardo DCGP, CINECA cluster)

2025-09-02 Thread Roland Haas
, Roland > [CAUTION: Non-UBC Email] > > Hi Roland, > > In the config file I attached, I do have this line included already: > > FPPFLAGS = -g -traditional > > Is there anything else I might try? > > Best, > Panayotis > ______

Re: [Users] ET build errors (Leonardo DCGP, CINECA cluster)

2025-09-02 Thread Roland Haas
Hello Panayotis, Thanks for including all the output files. In your options list whenever your set FPP you also must also set FPPFLAGS: FPPFLAGS=-traditional See eg generic.cfg or (very new!) Bruno's leonardo-DCGP.cfg file (in simfactory master). Yours, Roland > [CAUTION: Non-UBC Email] > >

[Users] meeting minutes for 2025-08-21

2025-08-21 Thread Roland Haas
Present: Peter, Roland, Steve, Beyhan, Johnny, Keith, Lucas, Maxwell, Yosef BBH gallery example === * no updates on BBH gallery examples, Roland to send reminders Backports to Kruskal * Roland provided updates, is mostly done with testing * extra changes for

[Users] meeting minutes for 2025-08-07

2025-08-14 Thread Roland Haas
Present: Deborah, Roland, Steve, Peter, Beyhan, Jhon, Johnny, Keith, Maxwell, Liwei, Yosef Chair: Deborah Minutes: Roland BBH gallery example === * no updates Questions on mailing list = * simfactory macros, https://lists.einsteintoolkit.org/pipermail/

Re: [Users] Meeting Minutes 2025-07-31

2025-07-31 Thread Roland Haas
Hello all, > ** 23 July Share Your Feedback... > Seems that it should not be in our mailing list, refers to software and > network tools(?). My fault, actually sorry. I thought this was going to the maintainer's list when I let it go through. Yours, Roland -- My email is as private as my pape

Re: [Users] Issues Downloading einsteintoolkit.th and Running GetComponents

2025-07-31 Thread Roland Haas
Hello Pahlavon, > I am currently trying to set up the Einstein Toolkit on my system (Ubuntu, > running via WSL2). However, I’ve encountered some issues during the process > and would greatly appreciate your assistance. I will try and suggest some steps. > Steps I followed: > >1. > >Clo

Re: [Users] Issue with ReadInterpolate

2025-07-25 Thread Roland Haas
Hello Luciano, I am not quite clear what's going on, ideally one would need the new grid structure and the old. My guess is that you may need to make the new coarsest grid a bit smaller than the old one (by the difference in boundary sizes would be my guess). If I recall correctly then ReadInterp

[Users] meeting minutes for 2025-07-24

2025-07-24 Thread Roland Haas
Present: Peter, Roland, Steve, Beyhan, Keith, Bill, Leo, Kruskal ET release == * no objections to Roland's proposal to merge changes required to build back to release branch * issues collected in https://bitbucket.org/einsteintoolkit/tickets/issues/2880/backport-externallibr

[Users] meeting minutes for 2025-07-03

2025-07-03 Thread Roland Haas
Present: Leo, Roland, Peter, Beyhan, Keith, Wei Sun, Zach gallery examples * still lacking updates for BBH gallery example for 2025_05 and 2024_11 gcc15 failures == * Zach suggested to compile ET with newest flavor of compilers regularly * Roland mentions that we co

Re: [Users] Problems with output in CarpetX

2025-06-30 Thread Roland Haas
Hello all, There's no VisIt instance installed on the tutorial server (it only provides an interface using jupyter notebooks, no X11 server access). I believe Steve has written some Python code to visualize CarpetX data. Yours, Roland > [CAUTION: Non-UBC Email] > > Javiera > > Unfortunately I

[Users] meeting minutes for 2025-06-19

2025-06-19 Thread Roland Haas
Present: Peter, Roland, Johnny, Keith, Lucas, Steve, Zach Next ET release === * Steve will be release chair * Zach proposed BHaHAHAH * missing gallery examples: BBH (Peter & Zach both), Poisson (Steve) ET summer school * workshop recordings are live on YouTube (also

Re: [Users] Problem installing the ETK

2025-06-19 Thread Roland Haas
Hello Konstantin, "DSO missing from command line" usually happens if you are not listing all libraries. Note that with static libraries order matters and eg for libsiloh5.a which requires HDF5 functions you need to have them like this: -lsiloh5 -lhdf5 ie the library that provides the functions l

[Users] meeting minutes for 2025-05-29

2025-05-29 Thread Roland Haas
Present: Steve, Deborah, Roland, Keith, Leo, Johnny, Liwei, Maxwell Einstein Toolkit release * Maxwell will send out announcement just after the call * Steve reminds the release managers to update the docs and release process notes * testsuite runs are only present for

Re: [Users] Agenda for Thursday's Meeting

2025-05-21 Thread Roland Haas
Hello all, During tomorrow's ET call we will have final votes for inclusion for: * CCE_Export, https://bitbucket.org/einsteintoolkit/tickets/issues/2864/spectre-cce-exporter * FLRWSolver_public, https://bitbucket.org/einsteintoolkit/tickets/issues/2848/updates-to-flrwsolver Yours, Roland -

[Users] number of thesis using the Einstein Toolkit codes

2025-05-06 Thread Roland Haas
Hello all, for a report to the NSF I am trying to obtain an idea of who many student thesis were using (whether in progress or submitted) the Einstein Toolkit. So if you are a student or are working with a student and have used the Einstein Toolkit as part of your thesis work in between 2024-07-0

[Users] meeting minutes for 2025-04-10

2025-04-10 Thread Roland Haas
Present: Roland, Peter, Steve, Zach, Deborah, Johnny, Keith, Leo ET release == * no updates on Z4c * Deborah is working through Lucas' comments on CCE * Zach is reviewing FLRWSolver * Peter will start reviewing ET summer school * no updates yet Other items ===

[Users] No Einstein Toolkit call today

2025-03-28 Thread Roland Haas
Hello all, Due to the ongoing APS April meeting, there will not be an Einsteun Toolkit call today. Yours, Roland ___ Users mailing list Users@einsteintoolkit.org http://lists.einsteintoolkit.org/mailman/listinfo/users

Re: [Users] Building the Einstein Toolkit in MN5: problem with SSHT

2025-03-28 Thread Roland Haas
Hello Samuel , > While compiling the toolkit on the Marenostrum 5 cluster, I > encountered the error shown in the attached screenshot. The build > process seems to attempt downloading the SSHT thorn from the > internet, but this cluster does not have an internet connection. I > have tried compilin

Re: [Users] Problem in installing Einstein Toolkit

2025-03-19 Thread Roland Haas
Hello Anisha, Sorry for the delay. Looking at the log files the issue seems to be a missing function or similar in the ADIOS library that openPMD expects to find. If this is on the Einstein Toolkit tutorial server (https://etk.cct.lsu.edu) could you try again starting from scratch, please? Nam

Re: [Users] Agenda for Thursday's Meeting

2025-03-17 Thread Roland Haas
Hello all, > Please update the Wiki with agenda items for Thursday's meeting. Thanks! There will not be an ET call this Thursday March 20th due to the ongoing APS 2025 April meeting. Yours, Roland -- My email is as private as my paper mail. I therefore support encrypting and signing email mess

Re: [Users] Error while building einsteintoolkit.th for GW150914

2025-03-01 Thread Roland Haas
Hello Sandeep, I can mostly only guess, sorry. If you could take a look at: https://einsteintoolkit.org/support.html#general-guidelines-for-questions and provide the requested files that could help. Beyond that my guess would be a too old gcc or so on the cluster you are working. If you only w

[Users] meeting minutes for 2025-02-20

2025-02-21 Thread Roland Haas
Present: Leo, Roland, Steve, Lucas, Johnny, Zach, Bill Leo inquired about options to use an IDE with the Einstein Toolkit == * cmake was suggested as a possible helper * Roland voiced dislike for cmake New Einstein Toolkit inclusions

Re: [Users] Acesso, Reunião

2025-02-14 Thread Roland Haas
Hello Valdir Vitalino, > vou ficar atento quinta feira da semana que vem se houver outra, porque > preciso de ajuda We meet every Thursday, so yes there will be a meeting at the same time and using the same Zoom link. Yours, Roland -- My email is as private as my paper mail. I therefore suppo

Re: [Users] Acesso, Reunião

2025-02-13 Thread Roland Haas
gt; > Message-ID: > > Content-Type: text/plain; charset="ANSI_X3.4-1968" > > > > Please update the Wiki with agenda items for Thursday's meeting. Thanks! > > > > https://urldefense.com/v3/__https://docs.einsteintoolkit.org/et-docs/meeting_agenda__;!!DZ3fjg!7Iv7hML_ZfbbjFqmNc0dHONYZc0MLd

Re: [Users] installation of ET on a cluster

2025-02-07 Thread Roland Haas
Hello Panagiotis, Thank you for your inquiry. This may help: http://einsteintoolkit.org/seminars/2022_02_24/index.html https://youtu.be/8dnOfQIk32c?feature=shared whose slides are: https://github.com/rhaas80/2024_LSU/blob/main/CactusBuildSytemTour.ipynb There's also some advanced simulation

Re: [Users] Users Digest, Vol 179, Issue 1

2025-02-03 Thread Roland Haas
com/in/valdir-vitalino__;!!DZ3fjg!8OgtkpmaWKzw-BQpR0DZmEwnkqOvP_xDSbWmClgM85ZjNPYdaVwwqVJhDPU9OIvvaRw-zYuUxG1POqXFUZdz_DV3ELENTwdy$ > > *+55 11 98923-1559 Telefone Móvel ** / WhatsApp* > > > Em dom., 2 de fev. de 2025 às 21:18, Roland Haas > escreveu: > > > Hello V

Re: [Users] Users Digest, Vol 179, Issue 1

2025-02-02 Thread Roland Haas
and past the text from the terminal and not take an image screenshot. Yours, Roland > Mas não está funcionando, não encontra GetComponentes > > Em dom., 2 de fev. de 2025 15:15, Roland Haas escreveu: > > > Hello Valdir Márcio Sena Vitalino, > > > > Pl

Re: [Users] Users Digest, Vol 179, Issue 1

2025-02-02 Thread Roland Haas
Hello Valdir Márcio Sena Vitalino, Please take a look at the instruction in https://github.com/einsteintoolkit/jupyter-et/blob/master/tutorial-server/notebooks/CactusTutorial.ipynb --8<-- On Windows 10/11 please install the Ubuntu Linux subsystem, then follow the instructions for a Ubuntu system

Re: [Users] libopenPMD missing, OpenPMD question

2025-01-31 Thread Roland Haas
Hello Bill, > > The library would be in configs/sim/scratch/external/ eg: > > > > ET_trunk/configs/sim/scratch/external/openPMD/lib/libopenPMD.a > > Nope, I see in the Cactus/configs/sim/scratch/external > > archimedes/gabe :ls > ./  ../  ADIOS2/  AMReX/  LORENE/  NSIMD/  SGRID/  Silo/ > > >

Re: [Users] libopenPMD missing, OpenPMD question

2025-01-31 Thread Roland Haas
Hello Bill, > [lots of stuff] > /scratch/gabella/simulations/helloworld/SIMFACTORY/exe/cactus_sim: error > while loading shared libraries: libopenPMD.so: cannot open shared object > file: No such file or directory Hmm, ExternalLibraries/openPMD which provides this (most likely, unless you are o

[Users] meeting minutes for 2025-01-30

2025-01-30 Thread Roland Haas
Present: Roland, Erik, Bill, Peter, Steve, Lucas, Zach reproducibility issues of data in BNS simulation * Zach reports that IllinoisGRMHD also runs con2prim in post-recover variables * reports are that results depend on number of MPI ranks, maybe

Re: [Users] Meeting minutes for 2025-01-16

2025-01-18 Thread Roland Haas
Hello all, Bruno, Before this takes on a live of its own: I re-did my own tests and found no more differences after a single Euler step. The issue that caused me to think there were differences before were: * I had looked at the wrong column in norms output and mistaken an "average" norm for

Re: [Users] Meeting minutes for 2025-01-16

2025-01-16 Thread Roland Haas
Hello all, > # Reproducibility issues with BNS > * Wolfgang Tichy has obtained different results with different MPI ranks on Sorry, my bad. Correction: Michal Pirog (who is working with Wolfgang) noticed these. Yours, Roland -- My email is as private as my paper mail. I therefore support encr

[Users] proposal to change Einstein Toolkit release cycle to be every 9 months instead every 6 months

2025-01-09 Thread Roland Haas
Hello all, During today's Einstein Toolkit call the proposal to reduce the Einstein Toolkit release frequency from every 6 months to every 9 months has been made. This would reduce the workload for the release manager and avoid the current situation where there is hardly any time between work for

[Users] meeting minutes for 2025-01-09

2025-01-09 Thread Roland Haas
Present: Leo, Lucas, Maxwell, Roland, Steve, Zach simfactory issues on anvil == * Maxwell had pointed out slowness of official files by a factor of 70 * Roland had tried to understand the root cause of the failure by modifying Maxwell's working files. So far is not exactl

[Users] meeting minutes for 2024-12-05

2024-12-05 Thread Roland Haas
Present: Roland, Bill, Peter, Zach, Johnny, Leo, Maxwell, Lucas, Steve ET Cannon release = * waiting for TOVola commit rights, Zach will try and follow up * some failing tests, likely due to tight tolerances * Peter finished BBH gallery example, everything looks fine, will skip

Re: [Users] need help running simulation on slurm

2024-12-04 Thread Roland Haas
Hello Maya, Sorry for the long delay in responding. > My name is Maya Baireddy. I am working on my school research project trying > to run the simulation of BNS merger on amarel supercomputer from my local > university. Thanks for contacting me. I will try and see if I can provide some help. >

Re: [Users] hybrid star setup in the TOVSolver thorn

2024-11-07 Thread Roland Haas
Hello all, There's also David Boyer's TOVola TOV initial data thorn (scheduled to be included in the November release of the ET), which may work. I have added David Boyer, its author, would you be able to comment on this? Yours, ROland > Hi, > > there is another TOV solver available in the "r

[Users] upcoming November 2024 Einstein Toolkit release

2024-11-07 Thread Roland Haas
Hello all, we are please to announce the anticipated release of the next version of the Einstein Toolkit code-named "Annie Jump Cannon" for 2024-11-29. Yours, Roland -- My email is as private as my paper mail. I therefore support encrypting and signing email messages. Get my PGP key from http:/

[Users] meeting minutes for 2024-11-07

2024-11-07 Thread Roland Haas
Present: Roland, Leo, Peter, Bill, Johnny, Lucas, Steve, Zach ET release == * Z4c will postponed due to lack of test * TOVola reviewed positively, will be included * testsuite status: none run yet ** Johnny will run on Frontera ** Roland mentioned failing IGM test, Leo will look at it, Sa

Re: [Users] Error with the Cactus Tutorial

2024-10-26 Thread Roland Haas
Hello Andre, > collect2: fatal error: ld terminated with signal 9 [Killed] Is unfortunately fairly generic and can be caused by multiple issues. If there is any more detailed error message above then it may give a hint as to what is going on. See eg here for which files may be helpful: https:/

Re: [Users] Issues with compiling Einstein Toolkit

2024-08-30 Thread Roland Haas
Hello Joachim, > I am trying to compile the Einstein toolkit on my MacBook Air with > the M2 chip. The compilation fails. Attached is the make.log. Does > anyone have an idea on how I can resolve this? Thanks for including the log file. This is mostly a macports issue I think not specifically M2

[Users] meeting minutes for 2024-08-29

2024-08-29 Thread Roland Haas
attendees: Roland, Zach, Maxwell, Leo, Peter, Keith ET release timeline === * no updates questions = particleTracer_ET * Leo asked about ways to make particleTracer_ET more efficient by reducing duplicate work on multiple ranks * current patch seems to have caused tes

Re: [Users] Problem installation Einstein Toolkit

2024-08-26 Thread Roland Haas
Hello Elena, > Thank you for answering. I still have problems. This is the output of > the compilation before the error: Thanks for including the log file. The error show there is --8<-- ld: library not found for -lsz collect2: error: ld returned 1 exit status --8<-- indicating that the link

Re: [Users] ET build warning about libgfortran and liblapack (again)

2024-08-23 Thread Roland Haas
Hello Rhiannon, > /usr/bin/ld: warning: libgfortran.so.3, needed by > /usr/lib64/../lib64/liblapack.so, may conflict with libgfortran.so.5 > > Is this a problem? > > I am loading the openblas module and setting the directory for the > libraries but maybe I'm still doing something wrong? I've att

Re: [Users] problem in setup einstein toolkit in ubuntu

2024-08-15 Thread Roland Haas
Hello vahid taherkhani, > in jupyter notebook this error: This is running the jupyter notebook server on your own laptop / workstation or using the ET tutorial server etk.cct.lsu.edu? > why occur this error > > with type this command: > > %%bash > ./GetComponents > https://urldefense.com/v3/__

Re: [Users] add me to email list

2024-08-15 Thread Roland Haas
Hello vahid taherkhani , > please add me to email list for help in einstein toolkit writing code Please use the signup form at: https://lists.einsteintoolkit.org/mailman/listinfo/users to sign up for the mailing list. Yours, Roland -- My email is as private as my paper mail. I therefore supp

Re: [Users] Problem installation Einstein Toolkit

2024-08-09 Thread Roland Haas
Hello Elena, > I tried to follow your suggestion and I modified the CFLAGS but I still have > the following error: > > make: *** [sim] Error 2 Is make's generic error response for any sort of error. Somewhere further up should be the actual reason that made the compilation stop. Could you try

[Users] meeting minutes for 2024-08-08

2024-08-08 Thread Roland Haas
Present: Roland, Steve, Peter, Khalil Pierre, Yosef ET release == * no updates, running late since in month 3 of the 6 month cycle Working group lists === * no objection to retire no longer active lists * keep archive around unanswered questions *

Re: [Users] tutorial and docker container for LORENE

2024-08-05 Thread Roland Haas
Hello Bruno, > yes, but the indico page may be soon password protected (for copyright > issues). So you may want to add also the link to the main page: > https://urldefense.com/v3/__https://www.ectstar.eu/trainings/dtp-talent-2024-nuclear-theory-for-astrophysics/__;!!DZ3fjg!5GV2ncw3DBMQRdeMy_SSAgW

Re: [Users] tutorial and docker container for LORENE

2024-08-02 Thread Roland Haas
Hello Bruno, Thanks for sharing this. This was discussed in the last ET call on August 1st https://lists.einsteintoolkit.org/pipermail/users/2024-August/009403.html and sounds like a good idea. I'll also add it to the ET wiki's Additional Tutorials section (which is a bit hidden unfortunately

Re: [Users] Segmentation fault in TOV test

2024-08-02 Thread Roland Haas
lem at the same time. > > The TOV test has run successfully now. > > Regards, > Rhiannon. > ____ > From: Roland Haas > Sent: 27 July 2024 17:47 > To: Rhiannon Silva > Cc: Einstein Toolkit Users > Subject: Re: [Users] Segmentation

Re: [Users] Segmentation fault in TOV test

2024-07-27 Thread Roland Haas
Hello Riannon, > I've managed to compile ET after switching to gnu compilers and > openmpi, but I'm getting this warning: > > /usr/bin/ld: warning: libgfortran.so.3, needed by > /usr/lib64/../lib64/liblapack.so, may conflict with libgfortran.so.5 That warning means that the liblapack library, wh

Re: [Users] Problem installation Einstein Toolkit

2024-07-25 Thread Roland Haas
Hello Elena, > I am Elena Goria and I want to use the Einstein Toolkit. Weclome to the toolkit! > I am writing to you because of a problem encountered in installing > the Einstein Toolkit. The errors that you are seeing (incompatible pointers) is something that showed up with very recent versi

[Users] meeting minutes for 2024-07-25

2024-07-25 Thread Roland Haas
Present: Steve, Peter, Roland, Bing-Ran HE, Lucas, Johnny, Nan Dong, Jake, Johnny, Cheng-Hsin, Liwei, Maxwell, Yosef ET release == * Maxwell will be release co-chair Unanswered questions * https://lists.einsteintoolkit.org/pipermail/users/2024-July/009393.html is

Re: [Users] Fortran compile errors

2024-07-22 Thread Roland Haas
, Rhiannon Silva wrote: > I have this: > > CPP = cpp > FPP = cpp > CC = icc > CXX = icpc > F90 = ifort > > CPPFLAGS = > FPPFLAGS = -traditional > > I've attached the file that contains the error. > > Thanks, > Rhiannon. >

Re: [Users] Fortran compile errors

2024-07-22 Thread Roland Haas
Hello Rhiannon, Hmm, there's not quite enough information in there to immediately see what may be going on unfortunately. http://einsteintoolkit.org/support.html#general-guidelines-for-questions In this case, if you could attach the file /nfshome/store04/users/c.c941286329/Cactus/configs/sim/bui

Re: [Users] Difference of running BNS template between reference result and my run

2024-07-22 Thread Roland Haas
Hello Sinan, > I have run the template of the BNS merger with different versions of > ET, specifically 202305 and 202211. The difference between the two > versions is negligible. However, there is a noticeable difference > between my run and the reference data provided on the ET website. > Since I

Re: [Users] hwloc build in ET: libtool error on NAS/Pleiades

2024-07-18 Thread Roland Haas
Hello Bernard, Looking at `libtool` on my workstation and looking for the error message I would say that is coming from this code: ``` -L*) func_stripname "-L" '' "$arg" if test -z "$func_stripname_result"; then if test "$#" -gt 0; then func_fatal_error

Re: [Users] compilation problem on Mac

2024-05-30 Thread Roland Haas
Hello Bruno, Giulia, This is with gcc14 I assume? Seems to be the same issue as in: https://bitbucket.org/einsteintoolkit/tickets/issues/2794/tacc-stampede3-skx-compilation-failing Note that fixing Reflections won't be the last such issue. Best would be to switch to the development branch. Yo

[Users] meeting minutes for 2024-05-23

2024-05-23 Thread Roland Haas
Present: Steve (chair), Peter, Roland (minute), Keith, Leo, Zach ET summer school and workshop at LSU * everything in order, have drivers for LIGO trip * Steve will present on Cactus Reduction instead of NRPy+ work ET release timeline === * r

Re: [Users] Error while running the following par file on Jupyter notebook

2024-05-14 Thread Roland Haas
Hello Zain, Usually "killed' on the jupyter host at LSU (or on your laptop) results from trying to use too much memory. The system at LSU is a single mid-sized virtual machine, designed to run the getting started notebook. Running a full simulation is not possible there since it runs out of reso

Re: [Users] Error while running the following par file on Jupyter notebook

2024-05-14 Thread Roland Haas
Hello Skhyzer, I think there was a second email of yours with more detail but that seems to have been eaten by the spam filter. In any case "killed' on the jupyter host at LSU most likely results from trying to use too much memory. The system at LSU is a single mid-sized virtual machine, designe

Re: [Users] Unable to register properly

2024-05-09 Thread Roland Haas
Hello Haris, So you started on https://etk.cct.lsu.edu/ and clicked on the "Sign in with CILogon" button. Did you then enter login information to log in via CILogin and ended up with a website that says "403: Frobidden" and "Please use the following link to request an account: Request Account.

Re: [Users] Unsubscribe from toolkit community.

2024-05-02 Thread Roland Haas
Hello Thejas, Sorry to see you go and thanks for letting us know. You can remove yourself from the mailing list using the link at the bottom of each email: http://lists.einsteintoolkit.org/mailman/listinfo/users or by sending email to the unsubscribe email address (the mailing list runs mailm

[Users] meeting minutes for 2024-04-25

2024-04-25 Thread Roland Haas
Present: Steve, Roland, Lucas, Sam, Zach, Peter (others I forgot to write down right away) ET release == * all thorns need to be added to thorn list: Multipole updates, Z4c, NewRadX * the upcoming 2024-05 will be "Landau", https://en.wikipedia.org/wiki/Lev_Landau * release managers to

Re: [Users] Cactus Code 4.15.0

2024-04-18 Thread Roland Haas
Hello David, > I just noticed that this error only shows up when 'DEBUG = yes' is > set in the configuration file. Everything works when debugging is > turned off but I think this could be an issue for anyone trying to > run a debugger on the code. I am guessing you are seeing an instance of thi

Re: [Users] Data from the simulation GW150914

2024-04-18 Thread Roland Haas
Hello Misyura Maxim, The full data may be available for the original authors of the Zenodo publication (in cc). Failing that there may be copies of similar data available from the last time the gallery example was run as a test case, eg by Debroah Ferguson, also in cc (though not all 3D data is s

Re: [Users] Support Ticket - Hamza

2024-04-16 Thread Roland Haas
Hello Hamza, > I am currently attempting to work my way through this website, for setting > up the Einstein toolkit on windows. Setup Tutorial - Einstein Toolkit > Documentation >

Re: [Users] question about checkpoints and number of procs

2024-04-15 Thread Roland Haas
Hello Luciano, > As a matter of fact, I had that option already activated, otherwise it > would just give me a memory error. Hmm, ok. > I'm thinking of maybe restarting the simulation with openMP activated to > speed up the process, do you think it will help? Otherwise, I will try your > hack. I

Re: [Users] question about checkpoints and number of procs

2024-04-15 Thread Roland Haas
Hello Luciano , > I'm trying to restart a simulation with a different number of processors > than the original run. Is there something in particular I need to do to > make it work? When I do, it gets stuck for hours reading the checkpoints. > The checkpoint is distributed in a number of files corr

Re: [Users] About SYNCs with staggered variables

2024-04-12 Thread Roland Haas
Hello Luciano, > Thanks for the tip Roland. > > I have tried it and it seems I'm getting the same efficiency nevertheless. Yeah, it was a bit of a long shot. > I was wondering whether, perhaps, the prolongations of the staggered > variables are somehow more expensive/inefficient? I could not t

Re: [Users] Unable to access public data in LORENE

2024-04-10 Thread Roland Haas
Hello Sinan, > As I am trying to cross-verify the reference results and my results, > I have a problem accessing public data in LORENE on this website > (https://urldefense.com/v3/__https://lorene.obspm.fr/data/binNS.html__;!!DZ3fjg!9jEPsXYtESmXIH5cgd7S9qJ18nLzn360bBMjfbSyXmob6ovcujmRuBwhQyERMlr6C

[Users] number of thesis using the Einstein Toolkit codes

2024-04-01 Thread Roland Haas
Hello all, For a report to the NSF I am trying to obtain an idea of who many student thesis were using (were enabled by) the Einstein Toolkit. So if you are a student or are working with a student and have used the Einstein Toolkit as part of your thesis work in between 2023-07-01 and 2024-06-30

Re: [Users] About SYNCs with staggered variables

2024-04-01 Thread Roland Haas
Hello Luciano, Given that factor of 3 that you notice, it could be that this is mostly some latency when doing network communication. If your memory usage allows it you can experiment with the option CarpetLib::combine_sends = "yes" see https://bitbucket.org/eschnett/carpet/src/master/CarpetLi

Re: [Users] WeylScal4 failing testsuites with ET_2023_11

2024-03-29 Thread Roland Haas
Hello Bernard, (closing the email thread by making sure it is marked as "responded") This should be fixed as of commit e185dc0c https://bitbucket.org/cactuscode/cactus/commits/e185dc0c014d148908054ff34e6a051988a87e59 of Cactus (see ticket https://bitbucket.org/einsteintoolkit/tickets/issues/2

[Users] meeting minutes for 2024-03-28

2024-03-28 Thread Roland Haas
Present: Roland, Peter, Sam, Steve, Zach ET US workshop == * date set to June 3 - 7 ET release timeline === * April 5th deadlines moved to April 19th * code is expected to be in master ** need to add Z4c ** need to add MultipoleX ** need to add NewRadX * create ticke

[Users] meeting minutes for 2024-02-29

2024-03-28 Thread Roland Haas
Present: Sam, Leo, Peter, Roland, Zach * did no reach quota * discussed book chapter with Springer, Roland to solicit extra authors for GRhydro section * no new emails * no new tickets Yours, Roland -- My email is as private as my paper mail. I therefore support encrypting and signing email m

[Users] Fwd: [nr-community-call] Applications due Mar 20 for SpECTRE community workshop

2024-03-13 Thread Roland Haas
(originally sent by Nils Vu to nr-community-c...@black-holes.org) Dear Numerical Relativists, This is a quick reminder that applications for our SpECTRE community workshop, Aug 5–9, 2024, at ICERM, Brown University, US, are due on Mar 20 (next Wednesday). You can find the full announcement of th

Re: [Users] WeylScal4 failing testsuites with ET_2023_11

2024-02-29 Thread Roland Haas
Hello all, I suspect: hash 4d9935b1 https://bitbucket.org/cactuscode/cactus/commits/4d9935b11d807dc47e6e69478c039e1dd507222c "Cactus: fix problem with current_scheduled_function being a global." before which the if(!presync_only) return true; was always true. See Cactus pull request: ht

[Users] meeting minutes for 2023-11-09

2023-11-09 Thread Roland Haas
Present: Roland, Peter, Steven, Leo, Sam, Zach CarpetX failure due to non-threads safe flesh = * Cactus flesh is not thread save, but is called from multi-threaded context in CarpetX * this causes a SEGFAULT, but only during PreSyncOnly mode * ticket

Re: [Users] Help with Cactus Tutorial (updating fuka and building toolkit)

2023-11-07 Thread Roland Haas
Hello Delaney, > Warning: Could not update fuka. Could not stash local changes. Error > message was 'error: open("codes/FUKAv1_Solvers/BBH/compile"): > Permission denied > fatal: Unable to process path codes/FUKAv1_Solvers/BBH/compile > Cannot save the current worktree state This is a git error t

Re: [Users] request for assistance

2023-11-07 Thread Roland Haas
Hello Liu, > Dear Einstein Toolkit developers,My name is Liu and I am a > student from Nagoya University. I am now learning to use ET to do > some simulations. This time I am trying to reproduce this one: href="https://urldefense.com/v3/__https://einsteintoolkit.org/gallery/bns/index.html__;!!DZ3f

Re: [Users] Help with GW150914 Black Hole simulation

2023-10-26 Thread Roland Haas
Hello Enzo, The example parameter file on the website is not set up to produce VTK output, so you will have to manually enable this output to be able to visualize the horizon. You will also have to yourself run the simulation or possible ask the original authors (see the Zenodo entry https://zenod

[Users] meeting minutes for 2023-10-12

2023-10-12 Thread Roland Haas
Present: Roland, Steve, Peter, Zach Testsuites == * Steve compiled code with nvcc and finds that some code tries to use GPU outside of CarpetX and fails * need to verify on different machines * this can be a blocker for the release, needs to be sorted out ET release == * not u

Re: [Users] Bugs on window system

2023-10-12 Thread Roland Haas
Hello Jeremy Gao, > I am facing this problem and do not know how to fix it. > > > There seems to have two bugs here, please help me. > Thank you so much! Windows is not directly supported by the Einstein Toolkit. Currently we advise to use the Windows Subsystem for Linux (WSL) to compile and ru

Re: [Users] 3D output of staggered grid functions

2023-10-12 Thread Roland Haas
Hello Michail, > So far, I have assumed that 3D HDF5 data will just contain the > respective grid function where the values are left unchanged from > those which are actually used during the evolution. That is correct. The HDF5 are just a memory dump o what is in the simulation. > However, I hav

[Users] meeting minutes for 2023-09-28

2023-09-28 Thread Roland Haas
Present: Roland, Steve, Peter, Leo, Sam, Zach New thorns in release: * deadline for review is Oct 11th * Sam and Roland added mising GRHayL thorns to autoamted tests SGRID importer: * Sam eventually heard back from authors * tried out provided thorn, fails since it is missing SGRID itself * Rola

[Users] meeting minutes for 2023-09-07

2023-09-07 Thread Roland Haas
Present: Roland, Steve, Peter, Yosef, Sam, Johnny, Leo, Zach ET release: * deadline to include thorns in thornlist was yesterday, none have been added ** Sam asks for a reviewer to look at GRHayl thornlist, Steve will look at pull request ** CarpetX still has issues, Roland will fix LoopCont

Re: [Users] Problems running BBH example

2023-09-03 Thread Roland Haas
Hello Krishna, all, Correction. This is happening on my brand new workstation with 12th Gen Intel(R) Core(TM) i7-12700 https://en.wikipedia.org/wiki/List_of_Intel_Core_i7_processors#Golden_Cove_+_Gracemont_microarchitecture_(12th_generation) with performance (16) and efficiency (4) logical cpu

Re: [Users] Problems running BBH example

2023-09-03 Thread Roland Haas
Hello Krishna, Turns out I am getting a similar issue myself now when running on my (old, well tested) laptop: cactus_sim: configs/sim/build/SystemTopology/system_topology.cc:471: void {anonymous}::set_bindings(hwloc_topology_t, const mpi_host_mapping_t&): Assertion `num_pus % num_cores == 0' f

Re: [Users] POWER code issues

2023-08-31 Thread Roland Haas
Hello Anuj, Thank you or your email. Those sound like bugs indeed. Could you create an ET ticket at https://bitbucket.org/einsteintoolkit/tickets/issues/new and I will try and see if I can incorporate the fixes you suggested quickly. Can you provide your replacement fitting code that you refe

Re: [Users] Loss of precision after postintial?

2023-08-31 Thread Roland Haas
i tensor. The codes > I use for these two calculations use the same routines, so all I can think of > now is a possible precision issue somewhere. > > I’ll keep investigating, but if you have any other ideas please let me know! > > Best, > Hayley > > > On 24 Aug

Re: [Users] Problems running BBH example

2023-08-24 Thread Roland Haas
Hello Krishna, The abort is triggered by the SystemTopology / HWLOC thorns having encountered a processor / core / PU combination that they did not expect. Is there anything in the stdout file? I am not quite familiar enough with hwloc in particular to really make a good suggestion. You can cert

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