[votca] Re: Installing Votca in linux
Thanks for the suggestions. I recompiled and finally ran
./build.sh -DWITH_SQLITE3=OFF --prefix ${prefix} tools csg
This completed with statement done with csg
Do I need to install the tools separately.
Rakhee
On Feb 15, 5:53 pm, Christoph Junghans jungh...@votca.org wrote:
Am 15. Februar 2012 13:39 schrieb Rakhee Pani rakheep...@gmail.com: I am
getting some error message related to fftw libraries .
91%] Building CXX object
src/libtools/CMakeFiles/votca_tools.dir/parsexml.cc.o
[ 95%] Building CXX object
src/libtools/CMakeFiles/votca_tools.dir/crosscorrelate.cc.o
Linking CXX shared library libvotca_tools.so
/usr/bin/ld: /usr/local/lib/libfftw3.a(mapflags.o): relocation R_X86_64_32
against `.rodata' can not be used when making a shared object; recompile
with -fPIC
/usr/local/lib/libfftw3.a: could not read symbols: Bad value
This is the good old shared vs. static linking issue.
Search our mailing list for R_X86_64_32 to find the details, but in
short the solution is to reconfigure and recompile fftw3 with
--enable-shared.
Christoph
collect2: ld returned 1 exit status
make[2]: *** [src/libtools/libvotca_tools.so.3] Error 1
make[1]: *** [src/libtools/CMakeFiles/votca_tools.dir/all] Error 2
make: *** [all] Error 2
Thanks
Rakhee
On Wed, Feb 15, 2012 at 3:23 PM, Christoph Junghans jungh...@votca.org
wrote:
Am 15. Februar 2012 12:47 schrieb Rakhee Pani rakheep...@gmail.com:
Following my previous message on installation of votca in ubuntu .I
fullfilled all dependencies and I still get an error message which is as
below .Should I use the --insecure in command line .
sudo ./build.sh --prefix ${prefix} tools csg
This is VOTCA build.sh, version 1.8.1
Install prefix is '/usr/local/bin'
Using 5 jobs for make
Working on tools
Doing checkout for tools fromhttps://tools.votca.googlecode.com/hg/
(CTRL-C to stop) 5 4 3 2 1
abort: tools.votca.googlecode.com certificate error: certificate is for
*.googlecode.com, *.u.googlecode.com, googlecode.com, *.codespot.com,
*.googlesource.com, googlesource.com (use --insecure to connect
insecurely)
If have added a fix in the buildutil, please update.
Christoph
Thanks All
Rakhee
On Sun, Dec 18, 2011 at 11:09 AM, Christoph Junghans
jungh...@votca.org
wrote:
Am 17. Dezember 2011 17:56 schrieb rp rakheep...@gmail.com:
Below is the CMakeError.log file , as mentioned using -DWITH_FFTW=NO
will lead to reduced functionality , will this option disable certain
tools.Again if I try
-DFFTW3_LIBRARY='/path/to/libfftw3.so' with ./build.sh , do I need to
replace /path/to with the place where fftw library files are
installed.
Yes!
In your last email, it said fftw was found, but some went wrong later.
Please post the end of that CMakeError.log.
Disabling fftw will only remove the ability to calculate correlation
functions.
Determining if the function pthread_create exists in the pthreads
failed with the following output:
Change Dir: /home/rp/src/tools/CMakeFiles/CMakeTmp
Run Build Command:/usr/bin/make cmTryCompileExec/fast
/usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make
CMakeFiles/
cmTryCompileExec.dir/build
make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp'
/usr/local/bin/cmake -E cmake_progress_report /home/rp/src/tools/
CMakeFiles/CMakeTmp/CMakeFiles 1
Building C object CMakeFiles/cmTryCompileExec.dir/
CheckFunctionExists.c.o
/usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -o
CMakeFiles/
cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/local/share/
cmake-2.8/Modules/CheckFunctionExists.c
Linking C executable cmTryCompileExec
/usr/local/bin/cmake -E cmake_link_script CMakeFiles/
cmTryCompileExec.dir/link.txt --verbose=1
/usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create
CMakeFiles/
cmTryCompileExec.dir/CheckFunctionExists.c.o -o cmTryCompileExec -
rdynamic -lpthreads
/usr/bin/ld: cannot find -lpthreads
collect2: ld returned 1 exit status
make[1]: Leaving directory `/home/rakhee/src/tools/CMakeFiles/
CMakeTmp'
make[1]: *** [cmTryCompileExec] Error 1
make: *** [cmTryCompileExec/fast] Error 2
Determining if the function pthread_create exists in the pthreads
failed with the following output:
Change Dir: /home/rakhee/src/tools/CMakeFiles/CMakeTmp
Run Build Command:/usr/bin/make cmTryCompileExec/fast
/usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make
CMakeFiles/
cmTryCompileExec.dir/build
make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp'
/usr/local/bin/cmake -E cmake_progress_report /home/rakhee/src/tools/
CMakeFiles/CMakeTmp/CMakeFiles 1
Building C object CMakeFiles/cmTryCompileExec.dir/
CheckFunctionExists.c.o
/usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -o
CMakeFiles
[votca] Coarse grained interactions
Dear Votca Users, I have my atomistic simulations done in using AMBER MD suite. In the Votca manual this mention on use of GROMACS trajectory and input file. I want derive the non bonded potentials using iterative Boltzmann inversion and bonded interactions using potential of mean force of the CG degrees of freedom. Can anyone give me some more information on the input files required for the procedure or where I can find some related examples. Can I work with the parameter and coordinate files used by AMBER. Thanks for suggestions Rakhee -- You received this message because you are subscribed to the Google Groups votca group. To post to this group, send email to votca@googlegroups.com. To unsubscribe from this group, send email to votca+unsubscr...@googlegroups.com. For more options, visit this group at http://groups.google.com/group/votca?hl=en.
[votca] Re: Installing Votca in linux
I installed all dependencies and ,get an error as below .Can you tell
me where am I going wrong.
checking for module 'fftw3'
-- found fftw3, version 3.3
-- Found FFTW3: /usr/local/lib/libfftw3.a
-- Looking for fftw_plan_r2r_1d in /usr/local/lib/libfftw3.a
-- Looking for fftw_plan_r2r_1d in /usr/local/lib/libfftw3.a - not
found
CMake Error at CMakeModules/FindFFTW3.cmake:43 (message):
Could not find fftw_plan_r2r_1d in /usr/local/lib/libfftw3.a, take a
look
at the error message in /home/rp/src/tools/CMakeFiles/CMakeError.log
to
find out what was going wrong. If you don't have pkg-config
installed you
will most likely have to set FFTW3_LIBRARY by hand (i.e.
-DFFTW3_LIBRARY='/path/to/libfftw3.so') !
Call Stack (most recent call first):
src/libtools/CMakeLists.txt:11 (find_package)
-- Configuring incomplete, errors occurred!
Thanks, I appreciate
On Dec 16, 11:24 am, Christoph Junghans jungh...@votca.org wrote:
Please read:
http://code.google.com/p/votca/wiki/Installing#From_Source
As described there, you need to add:
-DEXTERNAL_BOOST=OFF to the commandline of build.sh, e.g.
./build.sh -DEXTERNAL_BOOST=OFF tools csg
Alternatively, you could install boost and its dev package, see:
http://code.google.com/p/votca/wiki/Dependencies
Christoph
Am 15. Dezember 2011 23:25 schrieb rp rakheep...@gmail.com:
Following my previous message I reinstalled cmake and tried the steps
again to configure votca, this provides me with a different error as
below
Looking for sqrt in m - found-- Could NOT find BoostCMake Error at src/
CMakeLists.txt:5 (message): Boost not found, make sure you have also
installed boost and it's dev package or use our internal replacement
set -DEXTERNAL_BOOST=OFF
-- Configuring incomplete, errors occurred!
Can someone tell me how can I turn DEEXTERNAL_BOOST=OFF
Thanks
On Dec 15, 10:35 pm, rp rakheep...@gmail.com wrote:
This is what I get after the command line
+ shift
+ [[ -prefix = -* ]]
+ [[ -prefix = --*=* ]]
+ [[ -prefix = -[^-]?* ]]
+ [[ -prefix = -[jpD]* ]]
+ set -- -p refix --latest tools csg
+ case $1 in
+ prefix=refix
+ shift 2
+ [[ --latest = -* ]]
+ [[ --latest = --*=* ]]
+ [[ --latest = -[^-]?* ]]
+ case $1 in
+ rel=1.2.1
+ shift
+ [[ tools = -* ]]
+ version_check -q
++ get_version ./build.sh
++ sed -ne 's/^#version[[:space:]]*\([^[:space:]]*\)[[:space:]]*-- .*$/
\1/p' ./build.sh
++ sed -n '$p'
+ old_version=1.7.8
+ '[' -q = -q ']'
++ get_webversion -q
++ local version
++ '[' -q = -q ']'
+++ wget -qO-http://votca.googlecode.com/hg/build.sh
+++ get_version
+++ sed -ne 's/^#version[[:space:]]*\([^[:space:]]*\)[[:space:]]*-- .*
$/\1/p'
+++ sed -n '$p'
++ version=1.7.8
++ echo 1.7.8
+ new_version=1.7.8
+ '[' -q = -q ']'
+ '[' -q = -q ']'
+ expr 1.7.8 '' 1.7.8
+ return 1
+ [[ -z tools ]]
+ [[ -z refix ]]
+ [[ refix = *WHERE/TO/INSTALL/VOTCA* ]]
+ [[ refix = /* ]]
+ die 'prefix has to be a global path (should start with a '\''/'\'')'
+ [[ -n prefix has to be a global path (should start with a '/') ]]
+ cecho RED 'prefix has to be a global path (should start with a
'\''/'\'')'
+ local opts color 'colors=BLUE CYAN CYANN GREEN RED PURP'
+ [[ RED = -?* ]]
+ [[ -z prefix has to be a global path (should start with a '/') ]]
+ is_in RED 'BLUE CYAN CYANN GREEN RED PURP'
+ [[ -z RED ]]
+ [[ -z BLUE CYAN CYANN GREEN RED PURP ]]
+ [[ BLUE CYAN CYANN GREEN RED PURP = *\ \R\E\D\ * ]]
+ color=''
+ shift
+ echo -n ''
+ echo -ne 'prefix has to be a global path (should start with a
'\''/'\'')'
prefix has to be a global path (should start with a '/')+ echo ''
+ exit 1
Thanks for your time. I appreciate
On Dec 15, 10:00 pm, Christoph Junghans jungh...@votca.org wrote:
Just run:
$ ./build.sh --debug -prefix ${prefix} --latest tools csg
Am 15. Dezember 2011 19:46 schrieb rp rakheep...@gmail.com:
This is cmake 2.8.6 and I am installing votca in Ubuntu11.10. After
installing cmake there is no error .
Where should I add the debug option , please explain
I am installing votca-csg-1.2.1 . I want to make this clarification ,
I was using REDhat linux previously , now I am trying to do this in
Ubuntu .I read the Votca installation page and this says Ubuntu is
still in development . I am sorry if my question is not clear.
I appreciate your help
Thanks
On Dec 15, 7:50 pm, Christoph Junghans jungh...@votca.org wrote:
Hi rp,
which version of cmake is it?
$cmake --version
Please add the '--debug' option and attach the output.
Cheers,
Christoph
Am 15. Dezember 2011 11:42 schrieb rp rakheep...@gmail.com:
Dear Users,I get the following error while installing cmake not
found , below are some lines. Then I installed cmake and tried
again
so this send me the error as prefix shoudl start with / as this is
global path . I
[votca] Re: Installing Votca in linux
Below is the CMakeError.log file , as mentioned using -DWITH_FFTW=NO will lead to reduced functionality , will this option disable certain tools.Again if I try -DFFTW3_LIBRARY='/path/to/libfftw3.so' with ./build.sh , do I need to replace /path/to with the place where fftw library files are installed. Determining if the function pthread_create exists in the pthreads failed with the following output: Change Dir: /home/rp/src/tools/CMakeFiles/CMakeTmp Run Build Command:/usr/bin/make cmTryCompileExec/fast /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make CMakeFiles/ cmTryCompileExec.dir/build make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' /usr/local/bin/cmake -E cmake_progress_report /home/rp/src/tools/ CMakeFiles/CMakeTmp/CMakeFiles 1 Building C object CMakeFiles/cmTryCompileExec.dir/ CheckFunctionExists.c.o /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -o CMakeFiles/ cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/local/share/ cmake-2.8/Modules/CheckFunctionExists.c Linking C executable cmTryCompileExec /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ cmTryCompileExec.dir/link.txt --verbose=1 /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_createCMakeFiles/ cmTryCompileExec.dir/CheckFunctionExists.c.o -o cmTryCompileExec - rdynamic -lpthreads /usr/bin/ld: cannot find -lpthreads collect2: ld returned 1 exit status make[1]: Leaving directory `/home/rakhee/src/tools/CMakeFiles/ CMakeTmp' make[1]: *** [cmTryCompileExec] Error 1 make: *** [cmTryCompileExec/fast] Error 2 Determining if the function pthread_create exists in the pthreads failed with the following output: Change Dir: /home/rakhee/src/tools/CMakeFiles/CMakeTmp Run Build Command:/usr/bin/make cmTryCompileExec/fast /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make CMakeFiles/ cmTryCompileExec.dir/build make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' /usr/local/bin/cmake -E cmake_progress_report /home/rakhee/src/tools/ CMakeFiles/CMakeTmp/CMakeFiles 1 Building C object CMakeFiles/cmTryCompileExec.dir/ CheckFunctionExists.c.o /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -o CMakeFiles/ cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/local/share/ cmake-2.8/Modules/CheckFunctionExists.c Linking C executable cmTryCompileExec /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ cmTryCompileExec.dir/link.txt --verbose=1 /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_createCMakeFiles/ cmTryCompileExec.dir/CheckFunctionExists.c.o -o cmTryCompileExec - rdynamic -lpthreads /usr/bin/ld: cannot find -lpthreads collect2: ld returned 1 exit status make[1]: *** [cmTryCompileExec] Error 1 make[1]: Leaving directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' make: *** [cmTryCompileExec/fast] Error 2 Determining if the function pthread_create exists in the pthreads failed with the following output: Change Dir: /home/rp/src/tools/CMakeFiles/CMakeTmp Run Build Command:/usr/bin/make cmTryCompileExec/fast /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make CMakeFiles/ cmTryCompileExec.dir/build make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' /usr/local/bin/cmake -E cmake_progress_report /home/rakhee/src/tools/ CMakeFiles/CMakeTmp/CMakeFiles 1 Building C object CMakeFiles/cmTryCompileExec.dir/ CheckFunctionExists.c.o /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -o CMakeFiles/ cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/local/share/ cmake-2.8/Modules/CheckFunctionExists.c Linking C executable cmTryCompileExec /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ cmTryCompileExec.dir/link.txt --verbose=1 /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_createCMakeFiles/ cmTryCompileExec.dir/CheckFunctionExists.c.o -o cmTryCompileExec - rdynamic -lpthreads /usr/bin/ld: cannot find -lpthreads collect2: ld returned 1 exit status make[1]: *** [cmTryCompileExec] Error 1 make[1]: Leaving directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' make: *** [cmTryCompileExec/fast] Error 2 Determining if the function pthread_create exists in the pthreads failed with the following output: Change Dir: /home/rakhee/src/tools/CMakeFiles/CMakeTmp Run Build Command:/usr/bin/make cmTryCompileExec/fast /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make CMakeFiles/ cmTryCompileExec.dir/build make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' /usr/local/bin/cmake -E cmake_progress_report /home/rakhee/src/tools/ CMakeFiles/CMakeTmp/CMakeFiles 1 Building C object CMakeFiles/cmTryCompileExec.dir/ CheckFunctionExists.c.o /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -o CMakeFiles/ cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/local/share/ cmake-2.8/Modules/CheckFunctionExists.c Linking C executable cmTryCompileExec /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ cmTryCompileExec.dir/link.txt --verbose=1 /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_createCMakeFiles
[votca] Re: Installing Votca in linux
Dear Users,I get the following error while installing cmake not
found , below are some lines. Then I installed cmake and tried again
so this send me the error as prefix shoudl start with / as this is
global path . I used as ./build.sh -prefix ${prefix} --latest tools
csg
Using 9 jobs for makeWorking on toolsDownload tarball votca-
tools-1.2.1.tar.gz from
http://votca.googlecode.com/files/votca-tools-1.2.1.tar.gz--2011-12-15
13:26:17-- http://votca.googlecode.com/files/votca-
tools-1.2.1.tar.gzResolving votca.googlecode.com...
74.125.65.82Connecting to votca.googlecode.com|74.125.65.82|:80...
connected.HTTP request sent, awaiting response... 200 OKLength: 961500
(939K) [application/x-gzip]Saving to: `votca-tools-1.2.1.tar.gz'
100%[==] 961,500 2.16M/s in
0.4s
2011-12-15 13:26:18 (2.16 MB/s) - `votca-tools-1.2.1.tar.gz' saved
[961500/961500]
cmake not found
Thanks for any suggestions
On Nov 17, 4:17 pm, Marc Segovia marcsego...@gmail.com wrote:
Hi
Provided you have dependecies fine, follow the steps
prefix=WHERE/TO/INSTALL/VOTCA
mkdir -p ${prefix}/src
cd ${prefix}/src
wgethttp://votca.googlecode.com/hg/build.sh
chmod +x build.sh
./build.sh --prefix ${prefix} tools csg
maybe you can add gromacs on last line, like this
./build.sh --prefix ${prefix} gromacs tools csg
regards
Marc
Universidad de la Republica Uruguay
On Thu, Nov 17, 2011 at 7:01 PM, rp rakheep...@gmail.com wrote:
Yes I have seen this installation page . I downloaded Votca and would
like to know how should I go about installing thisin a linux box or in
linux cluster.
Thanks
On Nov 17, 3:38 pm, Konstantin Koschke konstantin.kosc...@gmail.com
wrote:
On Thu, Nov 17, 2011 at 8:22 PM, rp rakheep...@gmail.com wrote:
Can you send to instructions to install votca in linux.
Thanks for help
--
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Dear rp,
please be a bit more precise with your problem.
Did you try followinghttp://code.google.com/p/votca/wiki/Installing?
cheers,
konstantin
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[votca] Re: Installing Votca in linux
This is cmake 2.8.6 and I am installing votca in Ubuntu11.10. After
installing cmake there is no error .
Where should I add the debug option , please explain
I am installing votca-csg-1.2.1 . I want to make this clarification ,
I was using REDhat linux previously , now I am trying to do this in
Ubuntu .I read the Votca installation page and this says Ubuntu is
still in development . I am sorry if my question is not clear.
I appreciate your help
Thanks
On Dec 15, 7:50 pm, Christoph Junghans jungh...@votca.org wrote:
Hi rp,
which version of cmake is it?
$cmake --version
Please add the '--debug' option and attach the output.
Cheers,
Christoph
Am 15. Dezember 2011 11:42 schrieb rp rakheep...@gmail.com:
Dear Users,I get the following error while installing cmake not
found , below are some lines. Then I installed cmake and tried again
so this send me the error as prefix shoudl start with / as this is
global path . I used as ./build.sh -prefix ${prefix} --latest tools
csg
Using 9 jobs for makeWorking on toolsDownload tarball votca-
tools-1.2.1.tar.gz
fromhttp://votca.googlecode.com/files/votca-tools-1.2.1.tar.gz--2011-12-15
13:26:17-- http://votca.googlecode.com/files/votca-
tools-1.2.1.tar.gzResolving votca.googlecode.com...
74.125.65.82Connecting to votca.googlecode.com|74.125.65.82|:80...
connected.HTTP request sent, awaiting response... 200 OKLength: 961500
(939K) [application/x-gzip]Saving to: `votca-tools-1.2.1.tar.gz'
100%[==] 961,500 2.16M/s in
0.4s
2011-12-15 13:26:18 (2.16 MB/s) - `votca-tools-1.2.1.tar.gz' saved
[961500/961500]
cmake not found
Thanks for any suggestions
On Nov 17, 4:17 pm, Marc Segovia marcsego...@gmail.com wrote:
Hi
Provided you have dependecies fine, follow the steps
prefix=WHERE/TO/INSTALL/VOTCA
mkdir -p ${prefix}/src
cd ${prefix}/src
wgethttp://votca.googlecode.com/hg/build.sh
chmod +x build.sh
./build.sh --prefix ${prefix} tools csg
maybe you can add gromacs on last line, like this
./build.sh --prefix ${prefix} gromacs tools csg
regards
Marc
Universidad de la Republica Uruguay
On Thu, Nov 17, 2011 at 7:01 PM, rp rakheep...@gmail.com wrote:
Yes I have seen this installation page . I downloaded Votca and would
like to know how should I go about installing thisin a linux box or in
linux cluster.
Thanks
On Nov 17, 3:38 pm, Konstantin Koschke konstantin.kosc...@gmail.com
wrote:
On Thu, Nov 17, 2011 at 8:22 PM, rp rakheep...@gmail.com wrote:
Can you send to instructions to install votca in linux.
Thanks for help
--
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Groups votca group.
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athttp://groups.google.com/group/votca?hl=en.
Dear rp,
please be a bit more precise with your problem.
Did you try followinghttp://code.google.com/p/votca/wiki/Installing?
cheers,
konstantin
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--
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Web:http://www.compphys.de
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[votca] Re: Installing Votca in linux
This is what I get after the command line
+ shift
+ [[ -prefix = -* ]]
+ [[ -prefix = --*=* ]]
+ [[ -prefix = -[^-]?* ]]
+ [[ -prefix = -[jpD]* ]]
+ set -- -p refix --latest tools csg
+ case $1 in
+ prefix=refix
+ shift 2
+ [[ --latest = -* ]]
+ [[ --latest = --*=* ]]
+ [[ --latest = -[^-]?* ]]
+ case $1 in
+ rel=1.2.1
+ shift
+ [[ tools = -* ]]
+ version_check -q
++ get_version ./build.sh
++ sed -ne 's/^#version[[:space:]]*\([^[:space:]]*\)[[:space:]]*-- .*$/
\1/p' ./build.sh
++ sed -n '$p'
+ old_version=1.7.8
+ '[' -q = -q ']'
++ get_webversion -q
++ local version
++ '[' -q = -q ']'
+++ wget -qO- http://votca.googlecode.com/hg/build.sh
+++ get_version
+++ sed -ne 's/^#version[[:space:]]*\([^[:space:]]*\)[[:space:]]*-- .*
$/\1/p'
+++ sed -n '$p'
++ version=1.7.8
++ echo 1.7.8
+ new_version=1.7.8
+ '[' -q = -q ']'
+ '[' -q = -q ']'
+ expr 1.7.8 '' 1.7.8
+ return 1
+ [[ -z tools ]]
+ [[ -z refix ]]
+ [[ refix = *WHERE/TO/INSTALL/VOTCA* ]]
+ [[ refix = /* ]]
+ die 'prefix has to be a global path (should start with a '\''/'\'')'
+ [[ -n prefix has to be a global path (should start with a '/') ]]
+ cecho RED 'prefix has to be a global path (should start with a
'\''/'\'')'
+ local opts color 'colors=BLUE CYAN CYANN GREEN RED PURP'
+ [[ RED = -?* ]]
+ [[ -z prefix has to be a global path (should start with a '/') ]]
+ is_in RED 'BLUE CYAN CYANN GREEN RED PURP'
+ [[ -z RED ]]
+ [[ -z BLUE CYAN CYANN GREEN RED PURP ]]
+ [[ BLUE CYAN CYANN GREEN RED PURP = *\ \R\E\D\ * ]]
+ color=''
+ shift
+ echo -n ''
+ echo -ne 'prefix has to be a global path (should start with a
'\''/'\'')'
prefix has to be a global path (should start with a '/')+ echo ''
+ exit 1
Thanks for your time. I appreciate
On Dec 15, 10:00 pm, Christoph Junghans jungh...@votca.org wrote:
Just run:
$ ./build.sh --debug -prefix ${prefix} --latest tools csg
Am 15. Dezember 2011 19:46 schrieb rp rakheep...@gmail.com:
This is cmake 2.8.6 and I am installing votca in Ubuntu11.10. After
installing cmake there is no error .
Where should I add the debug option , please explain
I am installing votca-csg-1.2.1 . I want to make this clarification ,
I was using REDhat linux previously , now I am trying to do this in
Ubuntu .I read the Votca installation page and this says Ubuntu is
still in development . I am sorry if my question is not clear.
I appreciate your help
Thanks
On Dec 15, 7:50 pm, Christoph Junghans jungh...@votca.org wrote:
Hi rp,
which version of cmake is it?
$cmake --version
Please add the '--debug' option and attach the output.
Cheers,
Christoph
Am 15. Dezember 2011 11:42 schrieb rp rakheep...@gmail.com:
Dear Users,I get the following error while installing cmake not
found , below are some lines. Then I installed cmake and tried again
so this send me the error as prefix shoudl start with / as this is
global path . I used as ./build.sh -prefix ${prefix} --latest tools
csg
Using 9 jobs for makeWorking on toolsDownload tarball votca-
tools-1.2.1.tar.gz
fromhttp://votca.googlecode.com/files/votca-tools-1.2.1.tar.gz--2011-12-15
13:26:17-- http://votca.googlecode.com/files/votca-
tools-1.2.1.tar.gzResolving votca.googlecode.com...
74.125.65.82Connecting to votca.googlecode.com|74.125.65.82|:80...
connected.HTTP request sent, awaiting response... 200 OKLength: 961500
(939K) [application/x-gzip]Saving to: `votca-tools-1.2.1.tar.gz'
100%[==] 961,500 2.16M/s in
0.4s
2011-12-15 13:26:18 (2.16 MB/s) - `votca-tools-1.2.1.tar.gz' saved
[961500/961500]
cmake not found
Thanks for any suggestions
On Nov 17, 4:17 pm, Marc Segovia marcsego...@gmail.com wrote:
Hi
Provided you have dependecies fine, follow the steps
prefix=WHERE/TO/INSTALL/VOTCA
mkdir -p ${prefix}/src
cd ${prefix}/src
wgethttp://votca.googlecode.com/hg/build.sh
chmod +x build.sh
./build.sh --prefix ${prefix} tools csg
maybe you can add gromacs on last line, like this
./build.sh --prefix ${prefix} gromacs tools csg
regards
Marc
Universidad de la Republica Uruguay
On Thu, Nov 17, 2011 at 7:01 PM, rp rakheep...@gmail.com wrote:
Yes I have seen this installation page . I downloaded Votca and would
like to know how should I go about installing thisin a linux box or in
linux cluster.
Thanks
On Nov 17, 3:38 pm, Konstantin Koschke konstantin.kosc...@gmail.com
wrote:
On Thu, Nov 17, 2011 at 8:22 PM, rp rakheep...@gmail.com wrote:
Can you send to instructions to install votca in linux.
Thanks for help
--
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athttp://groups.google.com/group/votca?hl=en
[votca] Re: Installing Votca in linux
Following my previous message I reinstalled cmake and tried the steps
again to configure votca, this provides me with a different error as
below
Looking for sqrt in m - found-- Could NOT find BoostCMake Error at src/
CMakeLists.txt:5 (message): Boost not found, make sure you have also
installed boost and it's dev package or use our internal replacement
set -DEXTERNAL_BOOST=OFF
-- Configuring incomplete, errors occurred!
Can someone tell me how can I turn DEEXTERNAL_BOOST=OFF
Thanks
On Dec 15, 10:35 pm, rp rakheep...@gmail.com wrote:
This is what I get after the command line
+ shift
+ [[ -prefix = -* ]]
+ [[ -prefix = --*=* ]]
+ [[ -prefix = -[^-]?* ]]
+ [[ -prefix = -[jpD]* ]]
+ set -- -p refix --latest tools csg
+ case $1 in
+ prefix=refix
+ shift 2
+ [[ --latest = -* ]]
+ [[ --latest = --*=* ]]
+ [[ --latest = -[^-]?* ]]
+ case $1 in
+ rel=1.2.1
+ shift
+ [[ tools = -* ]]
+ version_check -q
++ get_version ./build.sh
++ sed -ne 's/^#version[[:space:]]*\([^[:space:]]*\)[[:space:]]*-- .*$/
\1/p' ./build.sh
++ sed -n '$p'
+ old_version=1.7.8
+ '[' -q = -q ']'
++ get_webversion -q
++ local version
++ '[' -q = -q ']'
+++ wget -qO-http://votca.googlecode.com/hg/build.sh
+++ get_version
+++ sed -ne 's/^#version[[:space:]]*\([^[:space:]]*\)[[:space:]]*-- .*
$/\1/p'
+++ sed -n '$p'
++ version=1.7.8
++ echo 1.7.8
+ new_version=1.7.8
+ '[' -q = -q ']'
+ '[' -q = -q ']'
+ expr 1.7.8 '' 1.7.8
+ return 1
+ [[ -z tools ]]
+ [[ -z refix ]]
+ [[ refix = *WHERE/TO/INSTALL/VOTCA* ]]
+ [[ refix = /* ]]
+ die 'prefix has to be a global path (should start with a '\''/'\'')'
+ [[ -n prefix has to be a global path (should start with a '/') ]]
+ cecho RED 'prefix has to be a global path (should start with a
'\''/'\'')'
+ local opts color 'colors=BLUE CYAN CYANN GREEN RED PURP'
+ [[ RED = -?* ]]
+ [[ -z prefix has to be a global path (should start with a '/') ]]
+ is_in RED 'BLUE CYAN CYANN GREEN RED PURP'
+ [[ -z RED ]]
+ [[ -z BLUE CYAN CYANN GREEN RED PURP ]]
+ [[ BLUE CYAN CYANN GREEN RED PURP = *\ \R\E\D\ * ]]
+ color=''
+ shift
+ echo -n ''
+ echo -ne 'prefix has to be a global path (should start with a
'\''/'\'')'
prefix has to be a global path (should start with a '/')+ echo ''
+ exit 1
Thanks for your time. I appreciate
On Dec 15, 10:00 pm, Christoph Junghans jungh...@votca.org wrote:
Just run:
$ ./build.sh --debug -prefix ${prefix} --latest tools csg
Am 15. Dezember 2011 19:46 schrieb rp rakheep...@gmail.com:
This is cmake 2.8.6 and I am installing votca in Ubuntu11.10. After
installing cmake there is no error .
Where should I add the debug option , please explain
I am installing votca-csg-1.2.1 . I want to make this clarification ,
I was using REDhat linux previously , now I am trying to do this in
Ubuntu .I read the Votca installation page and this says Ubuntu is
still in development . I am sorry if my question is not clear.
I appreciate your help
Thanks
On Dec 15, 7:50 pm, Christoph Junghans jungh...@votca.org wrote:
Hi rp,
which version of cmake is it?
$cmake --version
Please add the '--debug' option and attach the output.
Cheers,
Christoph
Am 15. Dezember 2011 11:42 schrieb rp rakheep...@gmail.com:
Dear Users,I get the following error while installing cmake not
found , below are some lines. Then I installed cmake and tried again
so this send me the error as prefix shoudl start with / as this is
global path . I used as ./build.sh -prefix ${prefix} --latest tools
csg
Using 9 jobs for makeWorking on toolsDownload tarball votca-
tools-1.2.1.tar.gz
fromhttp://votca.googlecode.com/files/votca-tools-1.2.1.tar.gz--2011-12-15
13:26:17-- http://votca.googlecode.com/files/votca-
tools-1.2.1.tar.gzResolving votca.googlecode.com...
74.125.65.82Connecting to votca.googlecode.com|74.125.65.82|:80...
connected.HTTP request sent, awaiting response... 200 OKLength: 961500
(939K) [application/x-gzip]Saving to: `votca-tools-1.2.1.tar.gz'
100%[==] 961,500 2.16M/s in
0.4s
2011-12-15 13:26:18 (2.16 MB/s) - `votca-tools-1.2.1.tar.gz' saved
[961500/961500]
cmake not found
Thanks for any suggestions
On Nov 17, 4:17 pm, Marc Segovia marcsego...@gmail.com wrote:
Hi
Provided you have dependecies fine, follow the steps
prefix=WHERE/TO/INSTALL/VOTCA
mkdir -p ${prefix}/src
cd ${prefix}/src
wgethttp://votca.googlecode.com/hg/build.sh
chmod +x build.sh
./build.sh --prefix ${prefix} tools csg
maybe you can add gromacs on last line, like this
./build.sh --prefix ${prefix} gromacs tools csg
regards
Marc
Universidad de la Republica Uruguay
On Thu, Nov 17, 2011 at 7:01 PM, rp rakheep...@gmail.com wrote:
Yes I have seen this installation page . I downloaded Votca and
would
like to know how should I go about
[votca] Installing Votca in linux
Can you send to instructions to install votca in linux. Thanks for help -- You received this message because you are subscribed to the Google Groups votca group. To post to this group, send email to votca@googlegroups.com. To unsubscribe from this group, send email to votca+unsubscr...@googlegroups.com. For more options, visit this group at http://groups.google.com/group/votca?hl=en.
[votca] Re: Installing Votca in linux
Yes I have seen this installation page . I downloaded Votca and would like to know how should I go about installing thisin a linux box or in linux cluster. Thanks On Nov 17, 3:38 pm, Konstantin Koschke konstantin.kosc...@gmail.com wrote: On Thu, Nov 17, 2011 at 8:22 PM, rp rakheep...@gmail.com wrote: Can you send to instructions to install votca in linux. Thanks for help -- You received this message because you are subscribed to the Google Groups votca group. To post to this group, send email to votca@googlegroups.com. To unsubscribe from this group, send email to votca+unsubscr...@googlegroups.com. For more options, visit this group athttp://groups.google.com/group/votca?hl=en. Dear rp, please be a bit more precise with your problem. Did you try followinghttp://code.google.com/p/votca/wiki/Installing? cheers, konstantin -- You received this message because you are subscribed to the Google Groups votca group. To post to this group, send email to votca@googlegroups.com. To unsubscribe from this group, send email to votca+unsubscr...@googlegroups.com. For more options, visit this group at http://groups.google.com/group/votca?hl=en.
