Re: [Wien] Mpirun Errors

2020-07-05 Thread Gavin Abo
Yu, In addition to the usersguide [1] describing use of "run_lapw -p" along with an appropriately set up .machines file, don't forget about the WIEN2k-notes of the University of Texas [2], the workshop video on Parallelization [3], and mailing list archive for previous posts on the topic of

Re: [Wien] Ghost band error

2020-07-12 Thread Gavin Abo
Probably you need to mention how you handled the core leakage issue during initialization (init_lapw) of WIEN2k 19.2 since if that was not addressed it might lead to the QTL error later during the scf: username@computername:~/wiendata/Li2NiPO4F_check$ ls Li2NiPO4F_check.struct

Re: [Wien] Ghost band error

2020-07-12 Thread Gavin Abo
lowing message in w2web page.  Commandline: : grep WARNING *.outputst Program input is: "" Execute another command line: Type of execution: Also, in case.outputst there is no warning message displayed. with regards, On Sun, 12 Jul 2020 at 21:30, Gav

Re: [Wien] Ghost band error

2020-07-12 Thread Gavin Abo
  ALTERNATIVELY: specify charge localization (between 0.97 and 1.0) to select core state STOP LSTART ENDS 1.4u 0.0s 0:01.45 100.0% 0+0k 0+11872io 0pf+0w & during 1st iteration, it is showing the ghost band error with regards, On Sun, 12 Jul 2020 at 19:49, Gavin Abo <mailto:gs...@crimson.ua.

Re: [Wien] Xcrysden issues with w2web

2020-06-22 Thread Gavin Abo
mend I set DISPLAY? Thank you *From:* Wien on behalf of Gavin Abo *Sent:* Saturday, June 13, 2020 4:55 PM *To:* wien@zeus.theochem.tuwien.ac.at *Subject:* Re: [Wien] Xcrysden issues with w2web Maybe there is still a problem

Re: [Wien] Query regarding structure optimization

2020-06-22 Thread Gavin Abo
The WIEN2k 19.1 usersguide [1] on page 67 under section 5.1.4 has: -dm   ->    calculate the density matrix (when -so is set, but -orb is not) That seems to indicate that the -dm needs -so to work (e.g., runsp_lapw -dm -so).  If you use "runsp_lapw -dm -orb", the program will probably

Re: [Wien] Irrep output file

2020-06-20 Thread Gavin Abo
I'm not sure that I have the proper answers but given below is what I'm currently thinking they might be. I am trying to extract irreducible representation of eigenvalues. I have obtained the case.outputirso and case.irrepso files. But I am not sure if I understood these files correctly. The Ci

Re: [Wien] Anti-ferromagnetism in FeO

2020-06-24 Thread Gavin Abo
not able to model AFM order. what to do? Looking forward to hearing from you. with regards, On Wed, 24 Jun 2020 at 08:01, Gavin Abo <mailto:gs...@crimson.ua.edu>> wrote: If a struct file fails during initialization (init_lapw), it is very likely that it will fail and not wo

Re: [Wien] Wien Installation

2020-06-15 Thread Gavin Abo
--?0?2?0?2-- *??:*?0?2"Gavin Abo"; *:*?0?22020??6??8??(??) 8:18 *??:*?0?2"wien"; *:*?0?2Re: [Wien] Wien Installation In terms of OpenBLAS-0.3.9 libraries, in my OpenBLAS-0.3.9/lib, there are several files as the below: libopen

Re: [Wien] Structure relaxation for WO3 with atomic insertion

2020-06-15 Thread Gavin Abo
In addition to the comments by the others, you might also check for the monoclinic if using beta as not equal 90 (where you have beta=90.881 below) for optimization is okay or not by referring the following link: https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg12124.html On

Re: [Wien] Wien Installation

2020-06-22 Thread Gavin Abo
Below it looks like the compiler shows you exactly what is wrong: /usr/bin/ld: cannot find -llibscalapack.a Most likely either the SCALAPACK_LIBNAME: libscalapack.a needs changed to use the dynamic scalapack library SCALAPACK_LIBNAME: scalapack to have -lscalapack or you might have to try

Re: [Wien] Xcrysden issues with w2web

2020-06-13 Thread Gavin Abo
nner, as I am running on Ubuntu. Is there a place where I need to set DISPLAY? *From:* Wien on behalf of Gavin Abo *Sent:* Saturday, June 6, 2020 11:05 AM *To:* wien@zeus.theochem.tuwien.ac.at *Subject:* Re: [Wien] Xcrys

Re: [Wien] libxc 5.0.0

2020-06-20 Thread Gavin Abo
tpars.F of SRC_lapw0.​ *From:* Wien on behalf of Gavin Abo *Sent:* Saturday, June 13, 2020 11:02 PM *To:* wien@zeus.theochem.tuwien.ac.at *Subject:* [Wien] libxc 5.0.0 The libxc website [1] has a new version 5.0.0, bu

Re: [Wien] Anti-ferromagnetism in FeO

2020-06-23 Thread Gavin Abo
If a struct file fails during initialization (init_lapw), it is very likely that it will fail and not work during the scf.  Your failed error during the scf seems to be proof of that as during init_lapw your struct file seems to fail right away during the nn step with errors "Mult not equal.

Re: [Wien] Reagarding StructGen in Wien2K19.1

2020-06-03 Thread Gavin Abo
Are the lattice constants okay? The webpage https://materialsproject.org/materials/mp-352/ has: a = 5.142 Å, b = 5.195 Å, c = 5.326 Å (or a = 9.716976 bohr, b = 9.817131 bohr, c = 10.064685 bohr) In your struct file below, I see: a = 0.523454 bohr, b = 0.648176 bohr, c = 0.633059 bohr

Re: [Wien] Xcrysden issues with w2web

2020-06-06 Thread Gavin Abo
Most likely you just need to kill and restart w2web. Refer to: https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg11246.html https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg01987.html On 6/6/2020 11:49 AM, Johnathon Street wrote: I unable to view crystal with

Re: [Wien] How to add BoltzTrap2 in Wien2k 19.2

2020-06-08 Thread Gavin Abo
BoltzTraP2 is a separate program and it reads in files (*.scf, *.struct, *.energy*) from WIEN2k 19.2.  Thus, you do not need to add it to WIEN2k. If you are using one of the latest Linux distributions that ships with Python 3, it is usually installed as given on the BoltzTraP2 website [1]

Re: [Wien] Wien Installation

2020-06-08 Thread Gavin Abo
In terms of OpenBLAS-0.3.9 libraries, in my OpenBLAS-0.3.9/lib, there are several files as the below: libopenblas_nehalemp-r0.3.9.a, libopenblas_nehalemp-r0.3.9.so, libopenblas.so, libopenblas.so.0, libopenblas.a. Are they as same as yours? I have the following, but you have the same one named

Re: [Wien] Volume has changed during running optimization of c/a with constant volume & b/a

2020-06-13 Thread Gavin Abo
By volume on the w2web page, are you referring to the estimated actual optimized volume (or lattice constants) given by the Equation of State fit(s) such as by Birch-Murnaghan seen in the post at [1]? As you have probably read in the post [2] or noticed, the case.struct files from "x optimize"

[Wien] WIEN2k_19.2.tar Missing SRC_lapw1

2020-06-13 Thread Gavin Abo
Prof. Blaha, When you have a chance, can you please fix the WIEN2k_19.2.tar in the download area of the website?  It seems that some change happened recently to it because the SRC_lapw1.tar.gz that used to be there when it was extracted from the downloaded file in the past is not there when

[Wien] libxc 5.0.0

2020-06-13 Thread Gavin Abo
The libxc website [1] has a new version 5.0.0, but it doesn't compile with WIEN2k (version 19.2).  I have linked in libxc 4.3.4 from [2] instead.  Does anyone have a patch for using the version 5.0.0? [1] https://www.tddft.org/programs/libxc/download/ [2]

Re: [Wien] Wien Installation

2020-06-02 Thread Gavin Abo
1. In a terminal, change into your WIEN2k directory: cd $WIENROOT 2. Run: ./siteconfig 3. Select Compiling Options: O 4. Check your R_LIBS line Your SRC_aim-compile.msg looks like it probably used: /usr/lib64/libpthread.so What works for me for R_LIBS is: -L/home/username/OpenBLAS-0.3.9

Re: [Wien] write_inwf syntaxerror

2020-07-22 Thread Gavin Abo
The write_inwf_lapw script was buggy in versions, such as WIEN2k 17.1 [1], that came before WIEN2k 19.1 as shown on the WIEN2k updates page [2] by: *VERSION_19.1: 17.6.2019* *write_inwf_lapw**:* update for spinpolarization It is recommended to use WIEN2k 19.2.  You may also want to apply the

Re: [Wien] Mailing List

2020-07-24 Thread Gavin Abo
If your case.struct file has one Mn atom corresponding to one inequivalent atomic position that has multiple equivalent atomic positions where you want to split the equivalent atomic positions into inequivalent ones, then you need to use the "set at least for one atom-name a special label" at

Re: [Wien] Space group change during running x sgroup

2020-07-24 Thread Gavin Abo
View case.struct of the supercell in StructGen of w2web.  If the supercell has a space group, it will show what it is.  If it has no space group, it should instead have a general lattice highlighted such as "P". The WIEN2k 19.1 usersguide [1] states on page 110 under section "6.2 SGROUP":

Re: [Wien] running wien2k as pure scripts

2020-07-28 Thread Gavin Abo
Also, if you prefer to use Python, you can make a wrapper around WIEN2k terminal commands.  For example, "init_lapw -b" could be used in an init_lapw.py file as shown in [1] by referencing [2]. [1] Temporary link:

Re: [Wien] Python script

2020-07-28 Thread Gavin Abo
You might want to have a look at Spaghetti-prima.py and JPlot on the WIEN2k unsupported webpage: http://susi.theochem.tuwien.ac.at/reg_user/unsupported/ Python based BoltzTraP2 plots bandstructure from WIEN2k: https://gitlab.com/sousaw/BoltzTraP2/-/wikis/tutorial BoltzTraP2 can be used as a

Re: [Wien] twisted angle

2020-11-09 Thread Gavin Abo
Let's assume there are two sheets of graphene: sheet 1 and sheet 2.  If sheet 1 is place at a fixed position but sheet 2 is placed directly above it in the z direction and then rotated around the z axis with an angle Theta. Perhaps this is one definition of a twisted angle (Theta). In other

Re: [Wien] TELNES calculation procedure

2020-11-11 Thread Gavin Abo
From looking at the post at https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg20597.html it looks like the steps are: run_lapw x qtl -telnes (or x lapw2 -qtl) x telnes3 According to section "8.24.3 Practical considerations" in the WIEN2k 19.1/19.2 usersguide on page 201 [

Re: [Wien] Need extensive help for a job file for slurm job scheduler cluster

2020-11-13 Thread Gavin Abo
If you have a look at [1], it can be seen that different cluster systems have different commands for job submission. I did not see it clearly shown in your post how the job was submitted, for example did you maybe use something similar to that at [2]: $ sbatch MyJobScript.sh *What command

Re: [Wien] qtl: error reading parallel vectors

2020-10-20 Thread Gavin Abo
I'm not sure about the physics of the following WIEN2k 19.2 parallel calculation (with all patches at [1] applied), but mechanically the "x qtl -p -telnes" seems to have run without error. I typically have SCRATCH in my .bashrc set to "./" but used another location

Re: [Wien] Incomplete DOS

2020-11-04 Thread Gavin Abo
If you can provide additional information, maybe someone can be of further assistance. For example ... Is this happening with WIEN2k 19.2, as one of the items in the "Nettiquette" list for the mailing list at [1] is "I am running wien version xxx"? [1]

Re: [Wien] write_inwf syntaxerror

2020-12-28 Thread Gavin Abo
If your using WIEN2k_19.2, then only follow [3] (do not follow [1]). Maybe you are not using your WIEN2k_19.2 installation directory but are still using your older WIEN2k version installation directory. For example, in an older WIEN2k version, you might see write_inwf_lapw is version 1.0.0

Re: [Wien] Formation energy

2021-01-01 Thread Gavin Abo
For searching the mailing list archive, refer to the webpage: http://susi.theochem.tuwien.ac.at/reg_user/mailing_list/ You can find previous posts on that topic.  For example: https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg13078.html

Re: [Wien] run_lapw command not found

2021-01-15 Thread Gavin Abo
Did you run userconfig_lapw [1] once to setup the WIENROOT variable in .bashrc (or .cshrc)? [1] https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg19445.html On 1/15/2021 8:04 AM, Subhasis Panda wrote: Dear Users and experts, We have installed Wien2k_19.1 in a HPC (Processor:

Re: [Wien] case.inkram

2021-01-16 Thread Gavin Abo
On slide 19 of http://susi.theochem.tuwien.ac.at/events/ws2017/notes/Laskowski_optic-xas.pdf it has "broadening for Drude terms choose gamma for each case". The above statement may be advising to do an extensive literature survey for the specific structure under calculation. Slide 20 has

Re: [Wien] XMCD S K-edge

2021-01-25 Thread Gavin Abo
It looks like the error is most likely because you gave the program one core value (E_core1 of -175.4856 on line 5) when it must have two. As seen under section "8.11.3 Input" on page 170 of the WIEN2k 19.1/19.2 usersguide [1], the joint program also must have as input an E_core2 value in

Re: [Wien] error 'n paralel lapw1

2021-02-03 Thread Gavin Abo
In addition, check other past posts in the WIEN2k mailing list archive and other WIEN2k outputs to that of the error files, such as the dayfile, as they might provide additional hints on what is causing the error.  For example, one of the posts that might help with parallel calculation

Re: [Wien] Parallel calculation

2021-06-08 Thread Gavin Abo
If you are using gfortran and gcc and it helps, some of the keystrokes I captured are shown below from when I installed WIEN2k 21.1.  These are just steps I follow as a guide for getting started and for a configuration that gets WIEN2k on my system up and running quickly.  After that, I

Re: [Wien] Structure optimization of a monoclinic lattice

2021-06-26 Thread Gavin Abo
I cannot remember for sure, but I think WIEN2k might need you to use 14_P21/a spacegroup setting in StructGen.  It looks like your struct file in StructGen has 14_P21/c. Have you perhaps went to: https://materialsproject.org/materials/mp-7944/# Click CIF next to Final Structure and click on

Re: [Wien] Confusion regarding supercell calculation

2021-06-28 Thread Gavin Abo
As far as I recall, "x optimize" creates a range of struct files that you specify when running that program for searching for the optimized structure parameters.  The scf calculations are completed on each one.  The energy and lattice parameter results generated from that are then fitted using

Re: [Wien] Fwd: test-suite.log Error 1

2021-04-24 Thread Gavin Abo
If it is just the hyb_mgga_x_js18 functional that you see failing in libxc-5.1.2/testsuite/xc-run_testsuite.log, it probably can be ignored as long as you are not using the hyb_mgga_x_js18 functional.  The testsuite is also failing for me with libxc-5.1.2 and libxc-5.1.3. I have submitted a

Re: [Wien] Cif File

2021-04-24 Thread Gavin Abo
For example, in the cif file below you see the lattice parameters (in the hexagonal setting) and spacegroup: _cell_length_a                    3.35 _cell_length_b                    3.35 _cell_length_c                    16.53 _cell_angle_alpha                90 _cell_angle_beta               

Re: [Wien] Fwd: test-suite.log Error 1

2021-05-01 Thread Gavin Abo
This is just to let those that use libxc know that when libxc 5.1.4 is released in the near future it will have the "make check" bug fixed: https://gitlab.com/libxc/libxc/-/issues/318#note_565312189 On 4/24/2021 9:19 AM, Gavin wrote: If it is just the hyb_mgga_x_js18 functional that you see

Re: [Wien] d start error

2021-04-29 Thread Gavin Abo
Under "Compile time errors (if any) were" during Compile/Recompile of dstart with siteconfig, is it blank showing a successful build or does it show an error with dstart and have you checked the $WIENROOT/SRC_dstart/compile.msg? username@computername:~/Desktop$ ls -l $WIENROOT/dstart ls:

Re: [Wien] MPI error

2021-05-04 Thread Gavin Abo
Three additional comments: 1)  If you are running the slurm.job script as Non-Interactive [1,2], you might need a "source /etc/profile.d/ummodules.csh" line like that at [3]. [1] https://slurm.schedmd.com/faq.html#sbatch_srun [2]

Re: [Wien] file format of case.int

2021-05-05 Thread Gavin Abo
The 2i5 is that in reference to line 4 seen on page 214 of the WIEN2k 21.1 usersguide [1] (which looks like it has not changed from that of WIEN2k 19.2 for that)? In x_lapw under case tetra, it looks like case.int is unit 5. In SRC_tetra/tetra.f, it looks like it is reading free form on line

Re: [Wien] Error in paralel Lapw1

2021-02-08 Thread Gavin Abo
You might also check what OMP_NUM_THREADS is set to on your system in .bashrc or .cshrc? For example, on my Ubuntu system, I do: username@computername:~/Desktop$ grep OMP_NUM_THREADS ~/.bashrc export OMP_NUM_THREADS=1 As you can see I'm using a different value than the default that would

Re: [Wien] error in hf+so calculaions

2021-04-04 Thread Gavin Abo
I have encountered the "gmax in case.inhf larger than gmax in case.in2" before.  Though, in my case, it was for case.in2c in cycle 1 of the scf that the error occurred instead of case.in2. In my case, it happened during a sloppy NiO calculation because gmax was 12 in NiO.in2c but I had put

Re: [Wien] Error in parallel LAPW2

2021-03-27 Thread Gavin Abo
Below, you mention you are using Intel 2018.5.274. Don't know if it helps or not, but what is the file size of the case.vector_1 for the failed case (+10) compared to the working ones (-10, -5, 0, 5)? There is this Intel post:

Re: [Wien] error in hf+so calculaions

2021-04-05 Thread Gavin Abo
c.at/msg20445.html [7] https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg05279.html On 4/5/2021 2:36 PM, Microsoft.com team wrote: Dear Prof. Gavin Abo Thanks a lot for your kind help. However, I removed all files from the case directory and started with structure file with

Re: [Wien] SO+HF calculations

2021-03-16 Thread Gavin Abo
I'm not an expert on hf calculations, but the WIEN2k 19.1 (19.2) UG [1] has on page 53 under Spin-orbit coupling has: run(sp)lapw -hf -so... I'm not seeing your command with the combined "-hf -so" options like in the UG and post at [2]. [1]

Re: [Wien] Running optics with hybrid functional

2021-02-27 Thread Gavin Abo
Not sure if helps or not, but your steps look different than what F. Tran wrote at: https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg18937.html On 2/27/2021 6:17 AM, pboulet wrote: Dear all, I am trying to perform an optic calculation with hybrid (HSE) functional. The problem

Re: [Wien] Running optics with hybrid functional

2021-02-27 Thread Gavin Abo
The WIEN2k 19.1 (or 19.2) UG [1] on page 55 under "Starting a calculation from another k-mesh" has: /Do the calculation with the first k-mesh and ”save” it when it is finished (do not execute clean_lapw since case.vectorhf should be present)./ From that, after your scf calculation of step 1

Re: [Wien] bug report: WIEN2k-21.1 : lapw1para_lapw

2021-04-15 Thread Gavin Abo
I don't think that is a Ubuntu bug.  It seemed to be intended behavior for many Linux distributions as some programs don't safely run in non-interactive mode as explained better in the reference [5] in the post at: https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg18685.html On

Re: [Wien] Regarding adding BoltzTraP to WIEN2k in graphical interface w2web

2021-02-16 Thread Gavin Abo
Probably, nobody in this mailing list can help you with that. That is because the WIEN2k users that developed and hosted the add_boltz2_to_w2web package for doing that changed its availability from public to private. A long time ago, I think a WIEN2k user mentioned to me in a private

Re: [Wien] Large forces appeared when calculating total energy after structure optimization

2021-02-06 Thread Gavin Abo
It might also be worth mentioning that you may need to look into the details of the structure that you are calculating. By that, I'm referring to how optimization of atomic coordinates does not work on structures were there are no atoms in a free atomic position and all atoms in the structure

Re: [Wien] converting struct file into CIF formant

2021-08-25 Thread Gavin Abo
hink what nobody else has thought", Albert Szent-Györgyi www.numis.northwestern.edu <http://www.numis.northwestern.edu> On Wed, Aug 25, 2021, 07:32 Gavin Abo <mailto:gabo13...@gmail.com>> wrote: See VESTA's website [1] on how it exports cif [2] and opens a .struct f

Re: [Wien] converting struct file into CIF formant

2021-08-25 Thread Gavin Abo
See VESTA's website [1] on how it exports cif [2] and opens a .struct file. CrystalMaker also has a "Import Data From: WIEN2k Structure" and "Export Data To: CIF" according to its website [3]. [1] https://jp-minerals.org/vesta/en/ [2] https://youtu.be/lxMbH71JvHA [3]

Re: [Wien] Error In lapw2 while doing AFM calculation

2021-08-29 Thread Gavin Abo
The .vsp from a non-spin polarized calculation (run_lapw) doesn't seem right.  It probably should be reading .vspup (or .vspdn) based on uplapw2.error for a spin polarized calculation. As described at [1], mixing those can cause issues.  You might try moving all files from the NaYbO1

Re: [Wien] Regarding "gather_energy.pl"

2021-08-14 Thread Gavin Abo
Are you perhaps referring to the gather_energy.pl in the BoltzTraP.tar.bz2 file downloadable at [1] as well as the patch available for it at [2]? [1]

Re: [Wien] Regarding "gather_energy.pl"

2021-08-14 Thread Gavin Abo
/2021 9:51 AM, Mohaddeseh Abbasnejad wrote: Dear Gavin Abo, Thanks for your help. I had installed BoltzTraP2 using the pip command. Now, I installed the code directly and I also modified the "gather_energy.pl <http://gather_energy.pl>" file using a patch for that. Ho

Re: [Wien] Error while doing AFM calculation

2021-09-13 Thread Gavin Abo
In your "NaYbO2 (2).struct" file, I see: ATOM  -2: X=0.3000 Y=0.3000 Z=0.3000 ATOM -15: X=0.7000 Y=0.7000 Z=0.7000 Are those supposed to be 1/3 and 2/3, respectively? If so, maybe it could lead to ghostbands like that seen the post at:

Re: [Wien] Error while doing AFM calculation

2021-09-16 Thread Gavin Abo
If I recall correctly, WIEN2k 19.1 had a bug that effected R lattices (thus your R-3m might be effected by it). The fix might have been the SRC_lapw1: coors.f seen under VERSION_21: 10.4.2021 on the updates page: http://susi.theochem.tuwien.ac.at/reg_user/updates/ If you are using gfortran

Re: [Wien] Error while doing AFM calculation

2021-09-16 Thread Gavin Abo
Correction below as some text was missing. If I recall correctly, WIEN2k 19.1 had a bug that effected R lattices (thus your R-3m might be effected by it). The fix might have been the SRC_lapw1: coors.f seen under VERSION_21: 10.4.2021 on the updates page:

Re: [Wien] Ghost band error

2021-09-18 Thread Gavin Abo
You might want to check what value you used for -ecut as I noticed a WARNING from lstart of WIEN2k 21.1 if the default value of -6.0 is used: username@computername:~/Desktop/test/LFP_opt$ ls LFP_opt.struct username@computername:~/Desktop/test/LFP_opt$ init_lapw -b -ecut -6.0 ...  next is lstart

Re: [Wien] Problem for the bandstructure with PBE+SOC

2021-09-10 Thread Gavin Abo
It sounds as if you prefer to use "init_so" in the terminal, but then like to do the bandstucture calculation in w2web. As Gerhard hinted at by his question "Did you start the scf cycle from "run SCF" and marked the box with spinorbit ?". In w2web, you could click "run SCF" in the left

Re: [Wien] errors @ wien2k_21.1 compilation

2021-08-03 Thread Gavin Abo
You might need the oneAPI Base Toolkit since at [1], I see: *Intel® oneAPI Base Toolkit* General Compute     Intel® oneAPI Collective Communications Library     Intel® oneAPI Data Analytics Library     Intel® oneAPI Deep Neural Networks Library     Intel® oneAPI DPC++/C++ Compiler     Intel®

Re: [Wien] error while loading shared libraries libmpi_usempif08.so.40

2021-08-06 Thread Gavin Abo
Will you help me now how to locate the "libmpi_usempif08.so.40" The libmpi_usempif08.so.40 seems to be a Open MPI file based on the webpage at: https://superuser.com/questions/1500931/error-in-linking-libmpi-so It looks like Shared Memory Open MPI might have got linked in when you compiled

Re: [Wien] Error in LAPW2

2021-10-09 Thread Gavin Abo
Maybe the following list of references and words taken from them can help: http://susi.theochem.tuwien.ac.at/reg_user/mailing_list/ - What command(s) was used for the calculation (e.g., init_lapw, run_lapw ..., runsp_lapw [-p] [-so] [-hf] ..., save_lapw)?

Re: [Wien] uplapw1.def failed

2021-10-15 Thread Gavin Abo
Dr. Chakrabarti, Looking at your "LCrT_GGA_opt_CrAFM_vol1.00.struct" in a text editor, I see you have a P lattice: P   LATTICE,NONEQUIV.ATOMS: 56 Which if the P lattice structure is not reduced by sgroup, it is probably computational demanding. In your email below, I see: lapw1  -up  

Re: [Wien] Fwd: Severe bug in SRC_aim

2021-10-03 Thread Gavin Abo
Can you also edit the Makefile (and Makefile.orig) for SRC_aim in WIEN2k 21.1 so that it compiles with gfortran?  It may be enough to change the two instances of lower case .f90 under the .F.o to upper case .F90. I have not tried compiling with those changes with ifort but those changes likely

Re: [Wien] mstar: Error: dM is not finite

2021-12-06 Thread Gavin Abo
of: ( : % [ . = => WIEN2k after May 2020 (the case.mommat2 file is not a fixed format) ---^ compilation aborted for read_mommat_pij.f90 (code 1) make: *** [read_mommat_pij.o] Error 1 Regards Bhamu On Mon, Dec 6, 2021 at 12:53 AM Gavin Abo wrote: According to the README.md at

Re: [Wien] error in parallel calculations

2021-12-27 Thread Gavin Abo
   Thanks for your help. It's working fine now. but why this message is printing The following is being printed as an informational message that shows that the lapw1 calculation on the first node is Done followed by tcsh commands the lapw1para_lapw script used for the

Re: [Wien] Mixer probelem

2021-12-26 Thread Gavin Abo
: .000228485000   CTEST: .0042395 STOP  LAPW0 END STOP  LAPW1 END STOP  LAPW2 END STOP  CORE  END STOP  MIXER END ec cc and fc_conv 1 1 1 >   stop On 12/26/2021 11:16 AM, Gavin Abo wrote: Can you provide more information to try to reproduce the error? I'm using the patches at [1] with WIE

Re: [Wien] Mixer probelem

2021-12-26 Thread Gavin Abo
Can you provide more information to try to reproduce the error? I'm using the patches at [1] with WIEN2k gfortran compiled [2] but I must have something different in my calculation setup because it completes successfully in cycle 7 on my system: username@computername:~/wiendata/test$ cat

Re: [Wien] error in parallel calculations

2021-12-26 Thread Gavin Abo
In the .bashrc file you posted, I see: # If not running interactively, don't do anything case $- in     *i*) ;;   *) return;; esac Have you check if that is returning before WIENROOT is set which could lead to the "lapw1c: command not found". If that this the case, the post at the

Re: [Wien] error in parallel calculations

2021-12-28 Thread Gavin Abo
_$lockfile[$p] ) >& .stdout1_$loop; if ( -f .stdout1_$loop ) bashtime2csh.pl_lapw .stdout1_$loop > .temp1_$loop; grep \% .temp1_$loop >> .time1_$loop; grep -v \% .temp1_$loop | perl -e "print stderr " ) In display output. On Tue,

Re: [Wien] Continuing confusion in dos...

2021-11-29 Thread Gavin Abo
There is the following, but maybe it will not help since it is just a list of links to previous posts already given in the mailing list. At [1], it advises to use "at least one iteration". In your post at [2] if I have interpreted it correctly, you have a 3D structure (cubic spinel supercell

Re: [Wien] Compiling Wien2k 21.1 on Ubuntu 20.04 with gfortran

2021-11-26 Thread Gavin Abo
I'm using Ubuntu 20.04 LTS  also but with a patched WIEN2k 21.1 that was compiled with gfortran and OpenBLAS.  The WIEN2k 21.1 bug fixes (patches) I got from the past posts in the mailing list.  A list of the url links to those posts are in the README file at [1]. I also recently encountered

Re: [Wien] Doubts regarding the volume optimization of a triclinic cell

2021-10-23 Thread Gavin Abo
I follow that your lattice parameters a=18.508 Bohr, b=39.835 Bohr, c=40.199 Bohr, α=119.701 degrees, β=103.309 degrees, and γ=90.0 degrees using the equation at [1] give you Volume_triclinic = 18.508 Bohr*39.835 Bohr*40.199 Bohr*sqrt(1-cos(119.701 degrees *(π radians/180

Re: [Wien] How to find the exact value of infinte epsilon?

2021-11-30 Thread Gavin Abo
There is the relation [1]: λ = hc/E Then with that: λ = limit_{E→0} [hc/E] = ∞ I seem to be missing what you defined epsilon_0 and epsilon_oo as. There is ε0 defined as the dielectric constant at low frequency and ε∞ the dielectric constant at high frequency like in equation (18) of [2],

Re: [Wien] mstar: Error: dM is not finite

2021-12-05 Thread Gavin Abo
According to the README.md at [1], read_mommat_pij.f90 has to be modified for WIEN2k 19.1.  Did you do that?  If you didn't do that it might explain why your dEij(n,k) and dEij(m,k) values are both zero. In the mstar.f90 source code (from lines 422 and 423) [2], you can see that dE needs to

Re: [Wien] Intel compilers

2021-07-18 Thread Gavin Abo
wrote: I use intel compilers because they are faster than gfortran. Is this what you see or you find then to be with same speed? Saludos Pablo *De:* Wien en nombre de Gavin Abo *Enviado:* viernes, 16 de julio de 2021 09:06

Re: [Wien] Intel compilers

2021-07-16 Thread Gavin Abo
that). [1] https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg21134.html [2] https://www.scivision.dev/intel-oneapi-fortran-install/ On 7/16/2021 8:00 PM, delamora wrote: Thank you Gavin Abo and Laurence Marks. It seems that I can download it from Mexico. Now; I want it for the WIEN2k

Re: [Wien] Intel compilers

2021-07-16 Thread Gavin Abo
The Intel compilers (e.g., C++ and Fortran) currently seem to be free for everyone with oneAPI without Priority Support from Intel as seen at: https://software.intel.com/content/www/us/en/develop/articles/free-intel-software-developer-tools.html If you need the Priority Support from Intel,

Re: [Wien] Regarding BoltzTraP2 for spin polarized materials

2021-07-23 Thread Gavin Abo
If you are referring to classical BoltzTraP (e.g., version 1.2.5), I have not seen any support recently for that and past support was very limited. If you are referring to BoltzTraP2 that the developers replaced the classical BoltzTraP with, that is supported over in BoltzTraP Google group. 

Re: [Wien] compile error after applying patches_w2k_ver21.1

2022-01-17 Thread Gavin Abo
Most likely to solve that, you would have to look in the compile.msg files as the program is showing. If there was an issue with patching the files, then you would have to go back to the WIEN2k tar package to extract the original file and then it could be patched again. The error messages

Re: [Wien] compile error after applying patches_w2k_ver21.1

2022-01-17 Thread Gavin Abo
If you go to [1], find for example "Documentation for the 5.1 release (PDF); optimization flags", click on optimization flags, then click on "3.10 Options That Control Optimization".  Then, it should take you to [2]. Under -O2, there is "Please note the warning under -fgcse about invoking -O2

Re: [Wien] Install Wien2k using oneAPI

2022-03-08 Thread Gavin Abo
. -- Is this ok? -------- *De:* Wien en nombre de Gavin Abo *Enviado:* miércoles, 23 de febrero de 2022 01:03 a. m. *Para:* wien@zeus.theochem.tuwien.ac.at *Asunto:* Re: [Wien] Install Wien2k using oneAPI I believe it might have been the we

Re: [Wien] FINDLOC issue with latest version of Wien2k with fortran v.15

2022-02-16 Thread Gavin Abo
-randr.so.0  libxcb.so.1                  libxcb-xinput.so.0 libQt6Network.so.6.1.3      libQt6QuickControls2.so.6.1.3  libQt6Widgets.so.6.1.3          libxcb-randr.so.0.1.0  libxcb.so.1.1.0              libxcb-xinput.so.0.1.0 Thank you very much Bhamu On Wed, Feb 16, 2022 at 4:30 PM Gavin Ab

Re: [Wien] FINDLOC issue with latest version of Wien2k with fortran v.15

2022-02-16 Thread Gavin Abo
With your offline install [1] command below, it will likely try to install it in Intel's default location (/opt/intel) which is typically for root permissions. You would need to install it in a user directory that you have user permission to.  That might be for example /home/username/intel. 

Re: [Wien] Install Wien2k using oneAPI

2022-02-22 Thread Gavin Abo
I believe it might have been the webpage at [1] that I followed to install oneAPI within Ubuntu, which had me run a single terminal command to install it: sudo apt install intel-hpckit I think I came across that webpage on the website at [2] having links to installation of oneAPI also for

Re: [Wien] orb -up / orb -dn status is not coming during SCF

2022-02-12 Thread Gavin Abo
What cycle is that for?  As described at [1], case.dmatup/dn must be present for orb to run.  If it is happening in the first scf cycle, it might be fine since I believe case.dmatup/dn are created during cycle 1 such that you won't see orb until cycle 2. [1]

Re: [Wien] Installing WIEN2k, w2web not running

2022-02-02 Thread Gavin Abo
That error looks similar to the one reported at: https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg20990.html According to the post at https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg21012.html the solution might have been to install the perl-Sys-Hostname

Re: [Wien] Instalation error

2022-01-26 Thread Gavin Abo
It might be for a very old version of Fedora the command: dnf install compat-libstdc++-33 The new command seems be for Fedora 35 based on [1]: dnf install libstdc++ or [2,3]: yum install libstdc++ [1]

Re: [Wien] Installing Wien2k_21 on Snellius, Dutch HPC

2022-02-05 Thread Gavin Abo
Whether installing on a local machine or a HPC system, the general installation instructions from section "11.2 Installation of WIEN2k" of the WIEN2k 21.1 usersguide [1] should be the same, which are: 1) Place WIEN2k_21.1.tar in a folder in your home directory (e.g.,

Re: [Wien] problems installing 21.1

2022-02-07 Thread Gavin Abo
Apparently, that FFTPACK error in your message below is an intended feature for WIEN2k 21.1.  It seems to be because FFTPACK support was removed.  Since on the WIEN2k updates page [1], there is the following: *all codes SRC_*/** have changed cmplx(a,b) to dcmplx(a,b), conjg to dconjg and in

Re: [Wien] amorphous binary rare-earth transition metal alloys

2022-01-19 Thread Gavin Abo
*Short answer* The WIEN2k webpage has the sentence [1]: /The linearized augmented plane wave (LAPW) method is among the most accurate methods for performing electronic *structure calculations for crystals*./ Amorphous is defined in [2] as non-crystalline and in [3] it means "shapeless" and

Re: [Wien] Speeding up calculations in parallel mose

2023-08-23 Thread Gavin Abo
Sometimes it can be better to have a cheap computer if you can remote connect to a high performance computing (hpc) [1] cluster. There can be quite a bit of difference in the computing resources that a thousand dollar desktop computer provides compared at a million dollar hpc [2]. If your

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