There's not meant to be a limitation - can you give an example of a command
line that fails?  

-----Original Message-----
From: [email protected]
[mailto:[email protected]] On Behalf Of Kristian
Sent: Thursday, April 16, 2009 11:56 AM
To: spctools-discuss
Subject: [spctools-discuss] Limit on number of pep.xml files that can be
analyzed with XInteract?


I'm using TPP 4.2.0 to analyze cleavable ICAT data from an LCQ.  When
all replicates are done, I have 120 seperate .pep.xml files to combine
and analyze.  With earlier versions of TPP (i.e. 3.4) I could analyze
them all at once with Xinteract, but with 4.2 the operation simply
aborts and fails with no error message.  I can analyze the files 40 at
a time and then combine the interact.pep files in protein prophet, but
I'm curious if and why there's a limitation on the number of input
files for Xinteract.


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