Hi Kristian,

Also, 4.2.1 contained many bug fixes.  I'm not sure if this would have been
addressed, but it's always most efficient for us if you can try to replicate
the issue on the latest version.

-Natalie


On Thu, Apr 16, 2009 at 12:42 PM, Christine Vogel <[email protected]>wrote:

>
> I have had some problems before if any of the pep.xml files had identical
> names.  Renaming them (and paths/names within the files) solved that
> problem.
>
> Christine
>
>
>
> On Thu, Apr 16, 2009 at 2:17 PM, Brian Pratt <[email protected]>wrote:
>
>>
>> There's not meant to be a limitation - can you give an example of a
>> command
>> line that fails?
>>
>> -----Original Message-----
>> From: [email protected]
>> [mailto:[email protected]] On Behalf Of Kristian
>> Sent: Thursday, April 16, 2009 11:56 AM
>> To: spctools-discuss
>> Subject: [spctools-discuss] Limit on number of pep.xml files that can be
>> analyzed with XInteract?
>>
>>
>> I'm using TPP 4.2.0 to analyze cleavable ICAT data from an LCQ.  When
>> all replicates are done, I have 120 seperate .pep.xml files to combine
>> and analyze.  With earlier versions of TPP (i.e. 3.4) I could analyze
>> them all at once with Xinteract, but with 4.2 the operation simply
>> aborts and fails with no error message.  I can analyze the files 40 at
>> a time and then combine the interact.pep files in protein prophet, but
>> I'm curious if and why there's a limitation on the number of input
>> files for Xinteract.
>>
>>
>>
>>
>
> >
>

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