I have had some problems before if any of the pep.xml files had identical names. Renaming them (and paths/names within the files) solved that problem.
Christine On Thu, Apr 16, 2009 at 2:17 PM, Brian Pratt <[email protected]>wrote: > > There's not meant to be a limitation - can you give an example of a command > line that fails? > > -----Original Message----- > From: [email protected] > [mailto:[email protected]] On Behalf Of Kristian > Sent: Thursday, April 16, 2009 11:56 AM > To: spctools-discuss > Subject: [spctools-discuss] Limit on number of pep.xml files that can be > analyzed with XInteract? > > > I'm using TPP 4.2.0 to analyze cleavable ICAT data from an LCQ. When > all replicates are done, I have 120 seperate .pep.xml files to combine > and analyze. With earlier versions of TPP (i.e. 3.4) I could analyze > them all at once with Xinteract, but with 4.2 the operation simply > aborts and fails with no error message. I can analyze the files 40 at > a time and then combine the interact.pep files in protein prophet, but > I'm curious if and why there's a limitation on the number of input > files for Xinteract. > > > > > --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
