Hello,
This looks like a potential bug in our ProteinProphet Viewer; can you please
confirm that this always happens when you analyze results from a library you
built?  In the meantime, please continue to open the spectra using the links
in the PepXMLViewer.

Thanks for the report,
--Luis

On Thu, Jun 25, 2009 at 11:51 AM, stharan <[email protected]> wrote:

>
> Hi All,
>
> I'm using TPP v4.2 JETSTREAM rev 1, Build 200904071723 (MinGW) and I
> have built my own spectral library to be used with SpectraST.  Library
> building works fine, searching using that library works fine and your
> able to run the prophets on the data.  However, when you open
> prot.shtml, click on a peptide, and try to look at the spectrum,
> plotspectrast throws an error and dies (the address bar looks like
>
> http://localhost/tpp-bin/plotspectrast.cgi?LibFile=NOT_FOUND&LibFileOffset=NOT_FOUND&QueryFile=c
> :\Inetpub\wwwroot\ISB\data\ubls/fat10_trp_run1&QueryScanNum=10128).
> I can view the same spectrum fine, if i follow the links through
> pep.shtml (address bar gets passed the correct libfile location:
>
> http://localhost/tpp-bin/plotspectrast.cgi?LibFile=c:/Inetpub/wwwroot/ISB/data/ubls/fat10_trp_consensus.splib&LibFileOffset=172490&QueryFile=c:/Inetpub/wwwroot/ISB/data/ubls/fat10_trp_run1.mzXML&QueryScanNum=10128
> )
>
> Any suggestions?
>
> >
>

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