Yes I noticed that post too.
I've installed the perl-devel rpm for fedora 7 (x86_64) but that
hasn't helped.
I have previously installed this version of TPP on RHEL 5.2 with no
problems related to perl.
I don't understand what the current problem is.
Here is the actual error message in case it helps:
/usr/bin/perl -pe "s/\/cygdrive\/c\/Inetpub\/tpp-bin\//\/usr\/local\/
apps\/tpp\/cgi\-bin\//g;s/\x24\{base_dir\}users\//\/usr\/local\/apps\/
tpp\/cgi-bin\/users\//g;s/\/tools\/bin\/TPP\/tpp\//\/usr\/local\/apps\/
tpp\//g;s/cygpath \-wp //g;s/\"\/cygdrive\/c\/Inetpub\/wwwroot\/\"/\
\x24ENV\{\'WEBSERVER_ROOT\'\}\.'\/'/g;s/\/tpp\-bin/\/tpp\/cgi\-bin/
g;s/'\/usr\/bin\//'/g;s/'\/bin\//'/g ;s/\/usr\/bin\/perl/\/usr\/bin\/
perl/g " < ../../perl/ProphetModels.pl > ../../build/linux/
ProphetModels.pl
/usr/bin/perl -c ../../build/linux/ProphetModels.pl
Can't load '/usr/local/apps/tpp/src/trans_proteomic_pipeline_4.2.1/
build/linux/tpplib_perl.so' for module tpplib_perl:
libboost_filesystem-gcc41-mt-1_38.so.1.38.0: cannot open shared object
file: No such file or directory at /usr/lib64/perl5/5.8.8/x86_64-linux-
thread-multi/DynaLoader.pm line 230.
at /usr/local/apps/tpp/src/trans_proteomic_pipeline_4.2.1/build/linux/
tpplib_perl.pm line 8
Compilation failed in require at ../../build/linux/ProphetModels.pl
line 44.
BEGIN failed--compilation aborted at ../../build/linux/
ProphetModels.pl line 44.
make[1]: *** [../../build/linux/ProphetModels.pl] Error 2
make[1]: *** Deleting file `../../build/linux/ProphetModels.pl'
make[1]: Leaving directory `/usr/local/apps/tpp/src/
trans_proteomic_pipeline_4.2.1/src/perl_paths'
make: *** [perl_paths] Error 2
Any hacks or suggestions?
Thanks
On Aug 17, 10:29 am, Dave Trudgian <[email protected]> wrote:
> Hi,
>
> I used CentOS for a while a year or so ago and recall that there is
> actually no perl-devel package for it, as per the list posting below.
> Fedora split perl into perl and perl-devel at some point, but this isn't
> the case in CentOS yet.
>
> http://www.linux-archive.org/centos-development/134685-perl-devel-pac...
>
> DT
>
>
>
> bill wrote:
> > Our main server is Centos5.2. TPP was compiled on this server without
> > having to install perl_devel but it was with the TPP release that CPAS
> > uses, which is a little old.
> > I searched pbone.net and there is a perl_devel rpm there that might be
> > worth trying.
>
> > On Aug 17, 9:33 am, GATTACA <[email protected]> wrote:
>
> >> Yeah I tried that, apparently perl-devel is not found in any of the
> >> Centos repos.
>
> >> On Aug 16, 9:46 pm, bill <[email protected]> wrote:
>
> >>> This was Fedora but try
> >>> yum search perl-devel
> >>> yum install if you find it.
> >>> On Aug 16, 9:40 pm, GATTACA <[email protected]> wrote:
>
> >>>> Hello Bill.
> >>>> I'm having the same problem on Centos 5.2
> >>>> I can't find the perl-devel rpm anywhere
> >>>> Could you tell me where you got it?
>
> >>>> I'm running perl 5.8.8 on x86_64.
>
> >>>> Thanks.
>
> >>>> On Aug 4, 10:19 am, bill <[email protected]> wrote:
>
> >>>>> After installing the perl-devel rpm and a lot of perl modules I did
> >>>>> get TPP installed on ami-45e7002c (fedora 8 with java and tomcat).
> >>>>> I'm just running the binaries running without the web interface so I
> >>>>> think I'm all set now.
> >>>>> I do appreciate the offer Joe.
> >>>>> Thanks,
> >>>>> Bill
>
> --
> Dr. David Trudgian
> Bioinformatician in Proteomics
> University of Oxford
>
> Mon-Thu: CCMP, Roosevelt Drive
> Tel: (+44) (01865 2)87807
>
> Friday : Dunn School of Pathology, S. Parks Rd.
> Tel: (+44) (01865 2)75557
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