It looks like it could be a boost libraries problem rather than a perl
problem, the important error being:
libboost_filesystem-gcc41-mt-1_38.so.1.38.0: cannot open shared object
file: No such file or directory at /usr/lib64/perl5/5.8.8/x86_64-linux-
thread-multi/DynaLoader.pm line 230.
The easiest way around this is should be to get TPP 4.3.0, as it
includes and builds the necessary boost libraries when you run make.
DT
GATTACA wrote:
> Yes I noticed that post too.
> I've installed the perl-devel rpm for fedora 7 (x86_64) but that
> hasn't helped.
> I have previously installed this version of TPP on RHEL 5.2 with no
> problems related to perl.
> I don't understand what the current problem is.
>
> Here is the actual error message in case it helps:
>
> /usr/bin/perl -pe "s/\/cygdrive\/c\/Inetpub\/tpp-bin\//\/usr\/local\/
> apps\/tpp\/cgi\-bin\//g;s/\x24\{base_dir\}users\//\/usr\/local\/apps\/
> tpp\/cgi-bin\/users\//g;s/\/tools\/bin\/TPP\/tpp\//\/usr\/local\/apps\/
> tpp\//g;s/cygpath \-wp //g;s/\"\/cygdrive\/c\/Inetpub\/wwwroot\/\"/\
> \x24ENV\{\'WEBSERVER_ROOT\'\}\.'\/'/g;s/\/tpp\-bin/\/tpp\/cgi\-bin/
> g;s/'\/usr\/bin\//'/g;s/'\/bin\//'/g ;s/\/usr\/bin\/perl/\/usr\/bin\/
> perl/g " < ../../perl/ProphetModels.pl > ../../build/linux/
> ProphetModels.pl
> /usr/bin/perl -c ../../build/linux/ProphetModels.pl
> Can't load '/usr/local/apps/tpp/src/trans_proteomic_pipeline_4.2.1/
> build/linux/tpplib_perl.so' for module tpplib_perl:
> libboost_filesystem-gcc41-mt-1_38.so.1.38.0: cannot open shared object
> file: No such file or directory at /usr/lib64/perl5/5.8.8/x86_64-linux-
> thread-multi/DynaLoader.pm line 230.
> at /usr/local/apps/tpp/src/trans_proteomic_pipeline_4.2.1/build/linux/
> tpplib_perl.pm line 8
> Compilation failed in require at ../../build/linux/ProphetModels.pl
> line 44.
> BEGIN failed--compilation aborted at ../../build/linux/
> ProphetModels.pl line 44.
> make[1]: *** [../../build/linux/ProphetModels.pl] Error 2
> make[1]: *** Deleting file `../../build/linux/ProphetModels.pl'
> make[1]: Leaving directory `/usr/local/apps/tpp/src/
> trans_proteomic_pipeline_4.2.1/src/perl_paths'
> make: *** [perl_paths] Error 2
>
> Any hacks or suggestions?
>
> Thanks
>
--
Dr. David Trudgian
Bioinformatician in Proteomics
University of Oxford
Mon-Thu: CCMP, Roosevelt Drive
Tel: (+44) (01865 2)87807
Friday : Dunn School of Pathology, S. Parks Rd.
Tel: (+44) (01865 2)75557
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