It also does away with trying to build a perl module, since that turned out to be such a headache for so many people.
Brian -----Original Message----- From: [email protected] [mailto:[email protected]] On Behalf Of Dave Trudgian Sent: Monday, August 17, 2009 8:26 AM To: [email protected] Subject: [spctools-discuss] Re: 4.2 build error tpplib_perl.so It looks like it could be a boost libraries problem rather than a perl problem, the important error being: libboost_filesystem-gcc41-mt-1_38.so.1.38.0: cannot open shared object file: No such file or directory at /usr/lib64/perl5/5.8.8/x86_64-linux- thread-multi/DynaLoader.pm line 230. The easiest way around this is should be to get TPP 4.3.0, as it includes and builds the necessary boost libraries when you run make. DT GATTACA wrote: > Yes I noticed that post too. > I've installed the perl-devel rpm for fedora 7 (x86_64) but that > hasn't helped. > I have previously installed this version of TPP on RHEL 5.2 with no > problems related to perl. > I don't understand what the current problem is. > > Here is the actual error message in case it helps: > > /usr/bin/perl -pe "s/\/cygdrive\/c\/Inetpub\/tpp-bin\//\/usr\/local\/ > apps\/tpp\/cgi\-bin\//g;s/\x24\{base_dir\}users\//\/usr\/local\/apps\/ > tpp\/cgi-bin\/users\//g;s/\/tools\/bin\/TPP\/tpp\//\/usr\/local\/apps\/ > tpp\//g;s/cygpath \-wp //g;s/\"\/cygdrive\/c\/Inetpub\/wwwroot\/\"/\ > \x24ENV\{\'WEBSERVER_ROOT\'\}\.'\/'/g;s/\/tpp\-bin/\/tpp\/cgi\-bin/ > g;s/'\/usr\/bin\//'/g;s/'\/bin\//'/g ;s/\/usr\/bin\/perl/\/usr\/bin\/ > perl/g " < ../../perl/ProphetModels.pl > ../../build/linux/ > ProphetModels.pl > /usr/bin/perl -c ../../build/linux/ProphetModels.pl > Can't load '/usr/local/apps/tpp/src/trans_proteomic_pipeline_4.2.1/ > build/linux/tpplib_perl.so' for module tpplib_perl: > libboost_filesystem-gcc41-mt-1_38.so.1.38.0: cannot open shared object > file: No such file or directory at /usr/lib64/perl5/5.8.8/x86_64-linux- > thread-multi/DynaLoader.pm line 230. > at /usr/local/apps/tpp/src/trans_proteomic_pipeline_4.2.1/build/linux/ > tpplib_perl.pm line 8 > Compilation failed in require at ../../build/linux/ProphetModels.pl > line 44. > BEGIN failed--compilation aborted at ../../build/linux/ > ProphetModels.pl line 44. > make[1]: *** [../../build/linux/ProphetModels.pl] Error 2 > make[1]: *** Deleting file `../../build/linux/ProphetModels.pl' > make[1]: Leaving directory `/usr/local/apps/tpp/src/ > trans_proteomic_pipeline_4.2.1/src/perl_paths' > make: *** [perl_paths] Error 2 > > Any hacks or suggestions? > > Thanks > -- Dr. David Trudgian Bioinformatician in Proteomics University of Oxford Mon-Thu: CCMP, Roosevelt Drive Tel: (+44) (01865 2)87807 Friday : Dunn School of Pathology, S. Parks Rd. Tel: (+44) (01865 2)75557 --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
