I'll have a quick look at this.

Brian

On Thu, Sep 17, 2009 at 12:13 AM, YAN <[email protected]> wrote:

>
> Hi everyone!
> Here are some more supplementary information from the output screen of
> TPP:
>
>  Command 1
>
>  c:\Inetpub\tpp-bin\ProteinProphet c:/Inetpub/wwwroot/ISB/data/
> probidoutput/ipimouse/interact.pep.xml c:/Inetpub/wwwroot/ISB/data/
> probidoutput/ipimouse/interact.prot.xml
>
> --------------------------------------------------------------------------------
>
> Command FAILED
>
>
>  Command 2 [Thu Sep 17 14:33:13 2009]        [ Show / Hide ]
>
>  c:\Inetpub\tpp-bin\protxml2html.pl -file c:/Inetpub/wwwroot/ISB/data/
> probidoutput/ipimouse/interact.prot.xml HTML
>
> --------------------------------------------------------------------------------
>
> ProteinProphet (C++) by Insilicos LLC and LabKey Software, after the
> original Perl by A. Keller (TPP v4.3 JETSTREAM rev 0, Build
> 200908071234 (MinGW))
>  (xml input) (report Protein Length) (using degen pep info)
> . . . reading in c:/Inetpub/wwwroot/ISB/data/probidoutput/ipimouse/
> interact.pep.xml. . .
> . . . read in 0 1+, 0 2+, 0 3+, 0 4+, 0 5+, 0 6+, 0 7+ spectra with
> min prob 0.05
> no data - quittingEND OUTPUT
> Writing results to html file: c:/Inetpub/wwwroot/ISB/data/probidoutput/
> ipimouse/interact.prot.html
> Command FAILED
> ................................................
>
> I am running TPP on Windows XP and I just wonder why the program can't
> read the data from the pepxml file.
> I have also uploaded the pepXML file to this group at
> http://groups.google.com/group/spctools-discuss/web/yan.zip
>
> Thanks a lot!
>  Yan
>
> >
>

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