It appears to have never been run though peptideProphet. I should add a bit of logic to proteinProphet to catch that and issue a more useful error message.
On Thu, Sep 17, 2009 at 10:52 AM, Brian Pratt <brian.pr...@insilicos.com>wrote: > I'll have a quick look at this. > > Brian > > On Thu, Sep 17, 2009 at 12:13 AM, YAN <ms006z...@hotmail.com> wrote: > >> >> Hi everyone! >> Here are some more supplementary information from the output screen of >> TPP: >> >> Command 1 >> >> c:\Inetpub\tpp-bin\ProteinProphet c:/Inetpub/wwwroot/ISB/data/ >> probidoutput/ipimouse/interact.pep.xml c:/Inetpub/wwwroot/ISB/data/ >> probidoutput/ipimouse/interact.prot.xml >> >> -------------------------------------------------------------------------------- >> >> Command FAILED >> >> >> Command 2 [Thu Sep 17 14:33:13 2009] [ Show / Hide ] >> >> c:\Inetpub\tpp-bin\protxml2html.pl -file c:/Inetpub/wwwroot/ISB/data/ >> probidoutput/ipimouse/interact.prot.xml HTML >> >> -------------------------------------------------------------------------------- >> >> ProteinProphet (C++) by Insilicos LLC and LabKey Software, after the >> original Perl by A. Keller (TPP v4.3 JETSTREAM rev 0, Build >> 200908071234 (MinGW)) >> (xml input) (report Protein Length) (using degen pep info) >> . . . reading in c:/Inetpub/wwwroot/ISB/data/probidoutput/ipimouse/ >> interact.pep.xml. . . >> . . . read in 0 1+, 0 2+, 0 3+, 0 4+, 0 5+, 0 6+, 0 7+ spectra with >> min prob 0.05 >> no data - quittingEND OUTPUT >> Writing results to html file: c:/Inetpub/wwwroot/ISB/data/probidoutput/ >> ipimouse/interact.prot.html >> Command FAILED >> ................................................ >> >> I am running TPP on Windows XP and I just wonder why the program can't >> read the data from the pepxml file. >> I have also uploaded the pepXML file to this group at >> http://groups.google.com/group/spctools-discuss/web/yan.zip >> >> Thanks a lot! >> Yan >> >> >> >> > --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to spctools-discuss@googlegroups.com To unsubscribe from this group, send email to spctools-discuss+unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
