Hi Xuan, Yes, I believe any number/letter combination works (e.g. MyPeptide001 etc). The flanking aminoacids are needed to help determine the enzyme cleavage efficiency; in my example they are K and W, but will be unique/different for each peptide in your list.
Cheers, --Luis On Thu, Dec 17, 2009 at 5:13 PM, Xuan Wang <[email protected]> wrote: > Hi Luis, > > Thank you so much for that! > What do you mean by Unique_Peptide_Identifier? Any number_letter > combination? > Are the flanking aminoacids for all peptides the same as in your example: > K___W? > > Thanks again, > Xuan > > 2009/12/17 Luis Mendoza <[email protected]> > > Hello Xuan, >> I am told that the format for the text file should be: >> >> Unique_Peptide_Identifier KTHEPEPTIDERW >> >> one peptide per line. You must also include both flanking aminoacids in >> the peptide sequence (in the example line above, the actual peptide is >> THEPEPTIDER). Also, make sure that each peptide identifier is unique, and >> that it contains no spaces. >> >> Hope this helps, >> --Luis >> >> >> On Wed, Dec 2, 2009 at 7:47 PM, wooyeah <[email protected]> wrote: >> >>> Dear all, >>> >>> I am using PeptideSieve, does anybody know the format of input txt >>> file that contain peptide sequence rather than protein fasta file? >>> >>> Thanks >>> Xuan >>> >>> -- >>> >>> You received this message because you are subscribed to the Google Groups >>> "spctools-discuss" group. >>> To post to this group, send email to [email protected]. >>> To unsubscribe from this group, send email to >>> [email protected]<spctools-discuss%[email protected]> >>> . >>> For more options, visit this group at >>> http://groups.google.com/group/spctools-discuss?hl=en. >>> >>> >>> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To post to this group, send email to [email protected]. >> To unsubscribe from this group, send email to >> [email protected]<spctools-discuss%[email protected]> >> . >> For more options, visit this group at >> http://groups.google.com/group/spctools-discuss?hl=en. >> > > > > -- > Xuan > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]<spctools-discuss%[email protected]> > . > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
