Thanks Luis! Is there any way I can find those flanking aminoacids? 2009/12/17 Luis Mendoza <[email protected]>
> Hi Xuan, > Yes, I believe any number/letter combination works (e.g. MyPeptide001 etc). > The flanking aminoacids are needed to help determine the enzyme cleavage > efficiency; in my example they are K and W, but will be unique/different for > each peptide in your list. > > Cheers, > --Luis > > > On Thu, Dec 17, 2009 at 5:13 PM, Xuan Wang <[email protected]> wrote: > >> Hi Luis, >> >> Thank you so much for that! >> What do you mean by Unique_Peptide_Identifier? Any number_letter >> combination? >> Are the flanking aminoacids for all peptides the same as in your example: >> K___W? >> >> Thanks again, >> Xuan >> >> 2009/12/17 Luis Mendoza <[email protected]> >> >> Hello Xuan, >>> I am told that the format for the text file should be: >>> >>> Unique_Peptide_Identifier KTHEPEPTIDERW >>> >>> one peptide per line. You must also include both flanking aminoacids in >>> the peptide sequence (in the example line above, the actual peptide is >>> THEPEPTIDER). Also, make sure that each peptide identifier is unique, and >>> that it contains no spaces. >>> >>> Hope this helps, >>> --Luis >>> >>> >>> On Wed, Dec 2, 2009 at 7:47 PM, wooyeah <[email protected]> wrote: >>> >>>> Dear all, >>>> >>>> I am using PeptideSieve, does anybody know the format of input txt >>>> file that contain peptide sequence rather than protein fasta file? >>>> >>>> Thanks >>>> Xuan >>>> >>>> -- >>>> >>>> You received this message because you are subscribed to the Google >>>> Groups "spctools-discuss" group. >>>> To post to this group, send email to [email protected]. >>>> To unsubscribe from this group, send email to >>>> [email protected]<spctools-discuss%[email protected]> >>>> . >>>> For more options, visit this group at >>>> http://groups.google.com/group/spctools-discuss?hl=en. >>>> >>>> >>>> >>> -- >>> You received this message because you are subscribed to the Google Groups >>> "spctools-discuss" group. >>> To post to this group, send email to [email protected]. >>> To unsubscribe from this group, send email to >>> [email protected]<spctools-discuss%[email protected]> >>> . >>> For more options, visit this group at >>> http://groups.google.com/group/spctools-discuss?hl=en. >>> >> >> >> >> -- >> Xuan >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To post to this group, send email to [email protected]. >> To unsubscribe from this group, send email to >> [email protected]<spctools-discuss%[email protected]> >> . >> For more options, visit this group at >> http://groups.google.com/group/spctools-discuss?hl=en. >> > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]<spctools-discuss%[email protected]> > . > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > -- Xuan -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
