Hi, Thanks for your time, some relief.... but few issues.... it will be nice if you have any clue.
After clean installatin of "TPP_Setup_v4_3_JETSTREAM_rev_1", "ActivePerl-5.8.9.827-MSWin32-x86-291969" "Apache 2.2.14" on WinXP ver2002 sp2, I am somehow able to write data files to network drive. All the processes run fine, I can also see the files under specific path of Z: drive "*results written to file z:/Inetpub/wwwroot/ISB/data/SAN/Test_Executer/research/Test_ZZZ_interact.xml direct your browser to ** http://server123:1441/ISB/data/SAN/Test_Executer/research/Test_ZZZ_interact.shtml *<http://server123:1441/ISB/data/SAN/Test_Executer/research/Test_ZZZ_interact.shtml> " *Issue: *a) When I try to browse the above url, IE 6 hangs and I get the message At the top of the page I get the error: Messages "Unable to access xml file via webserver, so cannot check xml file for changes () Check webserver configuration if desired. (URL: undefined)" b) On each click and whon clicking "Run XInteract" button blank command window appears and closes, is it because of any classpath/ configuration issue Please suggest what I am missing.. httpd.conf -------------- *ServerRoot "C:/Program Files/Apache Software Foundation/Apache2.2"* *DocumentRoot "C:/Program Files/Apache Software Foundation/Apache2.2/htdocs" SetEnv WEBSERVER_ROOT Z:/Inetpub/wwwroot* ** *Alias /tpp-bin "C:/Inetpub/tpp-bin" <Directory "C:/Inetpub/tpp-bin"> AllowOverride All Options Indexes FollowSymLinks MultiViews ExecCGI Includes AddHandler default-handler .jpg .png .css .ico .gif AddHandler cgi-script .cgi .pl Order allow,deny Allow from all SetEnv WEBSERVER_ROOT Z:/Inetpub/wwwroot </Directory> * *Alias /ISB "Z:/Inetpub/wwwroot/ISB" <Directory "Z:/Inetpub/wwwroot/ISB"> AllowOverride None Options Includes Indexes FollowSymLinks MultiViews ExecCGI Order allow,deny Allow from all AddType text/html .shtml AddHandler server-parsed .shtml PassEnv WEBSERVER_ROOT </Directory> * *Alias /schema "C:/Inetpub/wwwroot/schema" <Directory "C:/Inetpub/wwwroot"> Options Indexes MultiViews Includes AllowOverride None Order allow,deny Allow from all AddType text/html .shtml AddHandler server-parsed .shtml PassEnv WEBSERVER_ROOT PassEnv WEBSERVER_TMP </Directory>* On Tue, Mar 16, 2010 at 11:12 AM, Amit Yadav <[email protected]>wrote: > Did you refresh the page? Sometimes the command has run and the browser > times out. Refreshing will show the actual status. If it didnt help, try > running xinteract from command line and give full file paths for your input > and output files. > Hope it helps. > > Regards, > > Amit Kumar Yadav > Senior Research Fellow (SRF-CSIR) > IGIB, New Delhi (India) > > http://masswiz.igib.res.in > > > > > On Tue, Mar 16, 2010 at 7:13 PM, Vishal Swaroop <[email protected]>wrote: > >> Hi Amit, >> >> Thanks for the information. I am not sure if my issue is because of Active >> Perl version... but incase if you have any idea...? >> >> I am using "TPP_Setup_v4_3_JETSTREAM_rev_1", >> "ActivePerl-5.8.9.827-MSWin32-x86-291969", Apache 2.2.14 on "Win XP >> Professional Ver 2002 sp2". >> >> I am trying to write data files to mapped network drive (example Y:) and >> have exact copy from C:\Inetpub\wwwroot and C:\Inetpub\tpp-bin on Y: drive. >> >> When I click "Run XInteract" all processes work fine InteractParser, >> PeptideProphetParser, ProphetModels.pl, DatabaseParser, RefreshParser. >> >> But, it gets stuck on PepXMLViewer.cgi... *while creating *.xml.index*file >> forever.. >> >> "running: "Y:/Inetpub/wwwroot/../tpp-bin/PepXMLViewer.cgi -I >> y:/Inetpub/wwwroot/ISB/data/SAN/server1/Test_Executer/research/Test_2_interact.xml"" >> >> Output : It writes blank space >> 1.4 >> >> y:/Inetpub/wwwroot/ISB/data/SAN/server1/Test_Executer/research/Test_2_interact.xml >> .. >> 22 serialization::archive 5 0 0 0 126 >> y:/Inetpub/wwwroot/ISB/data/SAN/server1/Test_Executer/research/Test_2_interact.xml >> 0 0 0 1 8 spectrum 14 spectrum_query 0 0 1 50 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 >> 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 >> *** >> 1 >> 63886 >> <<< >> ... blank space and file continues to grow. >> >> >> >> >> >> On Tue, Mar 16, 2010 at 3:12 AM, Amit Yadav <[email protected]>wrote: >> >>> I am using TPP v 4.3 on Windows Vista Home premium (HP laptop) >>> ("TPP_Setup_v4_3_JETSTREAM_rev_0.exe" windows installer) and XP pro service >>> pack 3. Both machines work fine and have the same Activeperl version i >>> mentioned. >>> >>> Regards, >>> >>> Amit Kumar Yadav >>> Senior Research Fellow (SRF-CSIR) >>> IGIB, New Delhi (India) >>> >>> http://masswiz.igib.res.in >>> >>> >>> >>> >>> On Tue, Mar 16, 2010 at 9:52 AM, Vishal Swaroop >>> <[email protected]>wrote: >>> >>>> Hi Amit, >>>> >>>> Which TPP version you are using? >>>> >>>> Regards >>>> Vishal >>>> >>>> On Tue, Mar 9, 2010 at 11:44 PM, Amit Yadav < >>>> [email protected]> wrote: >>>> >>>>> Hi Matt, >>>>> >>>>> Have you tried ActivePerl 5.10.1.build 1006 (this is one of the recent >>>>> builds about 3-4 months back i guess)? >>>>> I am running TPP on this version and installation was smooth. >>>>> >>>>> Regards, >>>>> Amit Kumar Yadav >>>>> Senior Research Fellow (SRF-CSIR) >>>>> IGIB, New Delhi (India) >>>>> >>>>> http://masswiz.igib.res.in >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> On Wed, Mar 10, 2010 at 1:58 AM, Matthew Padula < >>>>> [email protected]> wrote: >>>>> >>>>>> Hi Natalie. The other versions of ActivePerl will not let TPP >>>>>> install, at least not the three different versions I tried yesterday >>>>>> including 5.8.9.827. All came up with the message described in your >>>>>> email. >>>>>> If they have worked fine for other installs, what have I managed to do >>>>>> wrong? The process seems fairly idiotproof. >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> Matt Padula (PhD). >>>>>> >>>>>> Technical Specialist. >>>>>> >>>>>> Proteomics Technology Centre of Expertise. >>>>>> >>>>>> University of Technology, Sydney. >>>>>> >>>>>> Level 6. Building 4. >>>>>> >>>>>> Cnr Harris St and Thomas St. >>>>>> >>>>>> Ultimo NSW 2007 >>>>>> >>>>>> Australia. >>>>>> >>>>>> Fax +61 2 9514 8206 >>>>>> >>>>>> Mob +61 (0)403 838 981 >>>>>> >>>>>> >>>>>> >>>>>> *From:* [email protected] [mailto: >>>>>> [email protected]] *On Behalf Of *Natalie Tasman >>>>>> *Sent:* Wednesday, 10 March 2010 5:31 AM >>>>>> *To:* [email protected] >>>>>> *Subject:* Re: [spctools-discuss] Active Perl 5.8.9.826 no longer >>>>>> available >>>>>> >>>>>> >>>>>> >>>>>> I see that in the current TPP (4.3.1) installer, we say " TPP requires >>>>>> ActivePerl version 5.8.8 or 5.10.x (available for free ActiveState, but >>>>>> we >>>>>> are not allowed to distribute it directly). Please install ActivePerl >>>>>> from >>>>>> [... ] and try the TPP installer again." However I see that the links >>>>>> we >>>>>> gave for ActiveState pointed to specific versions of Perl. We don't have >>>>>> any >>>>>> control over the ActiveState website, so the link shouldn't be so >>>>>> specific >>>>>> and we should just point to the top of the ActiveState website and let >>>>>> the >>>>>> user find the perl downloads themselves. This was probably a case of >>>>>> trying >>>>>> to be helpful (by pointing to then-current Perl downloads directly) and >>>>>> then >>>>>> getting bitten by changes in an external website. >>>>>> >>>>>> Thanks for pointing this out and we'll change the link for future >>>>>> releases. For now, the text of the message remains true: any recent 5.8 >>>>>> (5.8.8 or greater) or 5.10.x version will work fine. >>>>>> >>>>>> -Natalie >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> On 3/8/10 4:55 PM, Matt Padula wrote: >>>>>> >>>>>> Hi all. I have tried to install TPP on a different computer in the >>>>>> >>>>>> lab. On searching ActiveState's website for the required version of >>>>>> >>>>>> ActivePerl, I have discovered that it is no longer available. A quick >>>>>> >>>>>> search with Google for an alternative source of the installer has >>>>>> >>>>>> turned up nothing. Would anyone be able to direct me to a source? >>>>>> >>>>>> Version 5.8.9.827 does not work with the installer. >>>>>> >>>>>> >>>>>> >>>>>> With the publication of the papers recently, I think a few more people >>>>>> >>>>>> will be needing this. >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> -- >>>>>> You received this message because you are subscribed to the Google >>>>>> Groups "spctools-discuss" group. >>>>>> To post to this group, send email to >>>>>> [email protected]. >>>>>> To unsubscribe from this group, send email to >>>>>> [email protected]<spctools-discuss%[email protected]> >>>>>> . >>>>>> For more options, visit this group at >>>>>> http://groups.google.com/group/spctools-discuss?hl=en. >>>>>> UTS CRICOS Provider Code: 00099F >>>>>> DISCLAIMER: This email message and any accompanying attachments may >>>>>> contain confidential information. If you are not the intended recipient, >>>>>> do >>>>>> not >>>>>> read, use, disseminate, distribute or copy this message or >>>>>> attachments. If >>>>>> you have received this message in error, please notify the sender >>>>>> immediately >>>>>> and delete this message. Any views expressed in this message are those >>>>>> of the individual sender, except where the sender expressly, and with >>>>>> authority, >>>>>> states them to be the views of the University of Technology Sydney. >>>>>> Before >>>>>> opening any attachments, please check them for viruses and defects. >>>>>> >>>>>> Think. Green. Do. >>>>>> >>>>>> Please consider the environment before printing this email. >>>>>> >>>>>> -- >>>>>> You received this message because you are subscribed to the Google >>>>>> Groups "spctools-discuss" group. >>>>>> To post to this group, send email to >>>>>> [email protected]. >>>>>> To unsubscribe from this group, send email to >>>>>> [email protected]<spctools-discuss%[email protected]> >>>>>> . >>>>>> For more options, visit this group at >>>>>> http://groups.google.com/group/spctools-discuss?hl=en. >>>>>> >>>>> >>>>> -- >>>>> You received this message because you are subscribed to the Google >>>>> Groups "spctools-discuss" group. >>>>> To post to this group, send email to [email protected] >>>>> . >>>>> To unsubscribe from this group, send email to >>>>> [email protected]<spctools-discuss%[email protected]> >>>>> . >>>>> For more options, visit this group at >>>>> http://groups.google.com/group/spctools-discuss?hl=en. >>>>> >>>> >>>> -- >>>> You received this message because you are subscribed to the Google >>>> Groups "spctools-discuss" group. >>>> To post to this group, send email to [email protected]. >>>> To unsubscribe from this group, send email to >>>> [email protected]<spctools-discuss%[email protected]> >>>> . >>>> For more options, visit this group at >>>> http://groups.google.com/group/spctools-discuss?hl=en. >>>> >>> >>> -- >>> You received this message because you are subscribed to the Google Groups >>> "spctools-discuss" group. >>> To post to this group, send email to [email protected]. >>> To unsubscribe from this group, send email to >>> [email protected]<spctools-discuss%[email protected]> >>> . >>> For more options, visit this group at >>> http://groups.google.com/group/spctools-discuss?hl=en. >>> >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To post to this group, send email to [email protected]. >> To unsubscribe from this group, send email to >> [email protected]<spctools-discuss%[email protected]> >> . >> For more options, visit this group at >> http://groups.google.com/group/spctools-discuss?hl=en. >> > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]<spctools-discuss%[email protected]> > . > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
