Hi Vishal, If the command has run, then try using a text editor to open the xml files. i am better off with commandline and text editors. Somehow I fail to get the hang of interface (haven't devoted time there). Faced the same problem (i have all latest browsers on my system). Probably the file size is too much to handle for the browser. Try a text editor, browsers aren't meant to deal with huge files.
Regards, Amit Kumar Yadav Senior Research Fellow (SRF-CSIR) IGIB, New Delhi (India) http://masswiz.igib.res.in On Wed, Mar 17, 2010 at 12:50 AM, Vishal Swaroop <[email protected]>wrote: > Hi, > > Thanks for your time, some relief.... but few issues.... it will be nice if > you have any clue. > > After clean installatin of "TPP_Setup_v4_3_JETSTREAM_rev_1", > "ActivePerl-5.8.9.827-MSWin32-x86-291969" "Apache 2.2.14" on WinXP ver2002 > sp2, I am somehow able to write data files to network drive. > > All the processes run fine, I can also see the files under specific path of > Z: drive > "*results written to file > z:/Inetpub/wwwroot/ISB/data/SAN/Test_Executer/research/Test_ZZZ_interact.xml > direct your browser to ** > http://server123:1441/ISB/data/SAN/Test_Executer/research/Test_ZZZ_interact.shtml > *<http://server123:1441/ISB/data/SAN/Test_Executer/research/Test_ZZZ_interact.shtml> > " > > *Issue: > *a) When I try to browse the above url, IE 6 hangs and I get the message > At the top of the page I get the error: Messages > "Unable to access xml file via webserver, so cannot check xml file for > changes () Check webserver configuration if desired. (URL: undefined)" > b) On each click and whon clicking "Run XInteract" button blank command > window appears and closes, is it because of any classpath/ configuration > issue > > Please suggest what I am missing.. > > httpd.conf > -------------- > *ServerRoot "C:/Program Files/Apache Software Foundation/Apache2.2"* > *DocumentRoot "C:/Program Files/Apache Software > Foundation/Apache2.2/htdocs" > SetEnv WEBSERVER_ROOT Z:/Inetpub/wwwroot* > ** > *Alias /tpp-bin "C:/Inetpub/tpp-bin" > <Directory "C:/Inetpub/tpp-bin"> > AllowOverride All > Options Indexes FollowSymLinks MultiViews ExecCGI Includes > AddHandler default-handler .jpg .png .css .ico .gif > AddHandler cgi-script .cgi .pl > Order allow,deny > Allow from all > SetEnv WEBSERVER_ROOT Z:/Inetpub/wwwroot > </Directory> > * > *Alias /ISB "Z:/Inetpub/wwwroot/ISB" > <Directory "Z:/Inetpub/wwwroot/ISB"> > AllowOverride None > Options Includes Indexes FollowSymLinks MultiViews ExecCGI > Order allow,deny > Allow from all > AddType text/html .shtml > AddHandler server-parsed .shtml > PassEnv WEBSERVER_ROOT > </Directory> > * > *Alias /schema "C:/Inetpub/wwwroot/schema" > <Directory "C:/Inetpub/wwwroot"> > Options Indexes MultiViews Includes > AllowOverride None > Order allow,deny > Allow from all > AddType text/html .shtml > AddHandler server-parsed .shtml > PassEnv WEBSERVER_ROOT > PassEnv WEBSERVER_TMP > </Directory>* > > > > > On Tue, Mar 16, 2010 at 11:12 AM, Amit Yadav <[email protected]>wrote: > >> Did you refresh the page? Sometimes the command has run and the browser >> times out. Refreshing will show the actual status. If it didnt help, try >> running xinteract from command line and give full file paths for your input >> and output files. >> Hope it helps. >> >> Regards, >> >> Amit Kumar Yadav >> Senior Research Fellow (SRF-CSIR) >> IGIB, New Delhi (India) >> >> http://masswiz.igib.res.in >> >> >> >> >> On Tue, Mar 16, 2010 at 7:13 PM, Vishal Swaroop >> <[email protected]>wrote: >> >>> Hi Amit, >>> >>> Thanks for the information. I am not sure if my issue is because of >>> Active Perl version... but incase if you have any idea...? >>> >>> I am using "TPP_Setup_v4_3_JETSTREAM_rev_1", >>> "ActivePerl-5.8.9.827-MSWin32-x86-291969", Apache 2.2.14 on "Win XP >>> Professional Ver 2002 sp2". >>> >>> I am trying to write data files to mapped network drive (example Y:) and >>> have exact copy from C:\Inetpub\wwwroot and C:\Inetpub\tpp-bin on Y: drive. >>> >>> When I click "Run XInteract" all processes work fine InteractParser, >>> PeptideProphetParser, ProphetModels.pl, DatabaseParser, RefreshParser. >>> >>> But, it gets stuck on PepXMLViewer.cgi... *while creating *.xml.index*file >>> forever.. >>> >>> "running: "Y:/Inetpub/wwwroot/../tpp-bin/PepXMLViewer.cgi -I >>> y:/Inetpub/wwwroot/ISB/data/SAN/server1/Test_Executer/research/Test_2_interact.xml"" >>> >>> Output : It writes blank space >>> 1.4 >>> >>> y:/Inetpub/wwwroot/ISB/data/SAN/server1/Test_Executer/research/Test_2_interact.xml >>> .. >>> 22 serialization::archive 5 0 0 0 126 >>> y:/Inetpub/wwwroot/ISB/data/SAN/server1/Test_Executer/research/Test_2_interact.xml >>> 0 0 0 1 8 spectrum 14 spectrum_query 0 0 1 50 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 >>> 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 >>> *** >>> 1 >>> 63886 >>> <<< >>> ... blank space and file continues to grow. >>> >>> >>> >>> >>> >>> On Tue, Mar 16, 2010 at 3:12 AM, Amit Yadav >>> <[email protected]>wrote: >>> >>>> I am using TPP v 4.3 on Windows Vista Home premium (HP laptop) >>>> ("TPP_Setup_v4_3_JETSTREAM_rev_0.exe" windows installer) and XP pro service >>>> pack 3. Both machines work fine and have the same Activeperl version i >>>> mentioned. >>>> >>>> Regards, >>>> >>>> Amit Kumar Yadav >>>> Senior Research Fellow (SRF-CSIR) >>>> IGIB, New Delhi (India) >>>> >>>> http://masswiz.igib.res.in >>>> >>>> >>>> >>>> >>>> On Tue, Mar 16, 2010 at 9:52 AM, Vishal Swaroop <[email protected] >>>> > wrote: >>>> >>>>> Hi Amit, >>>>> >>>>> Which TPP version you are using? >>>>> >>>>> Regards >>>>> Vishal >>>>> >>>>> On Tue, Mar 9, 2010 at 11:44 PM, Amit Yadav < >>>>> [email protected]> wrote: >>>>> >>>>>> Hi Matt, >>>>>> >>>>>> Have you tried ActivePerl 5.10.1.build 1006 (this is one of the recent >>>>>> builds about 3-4 months back i guess)? >>>>>> I am running TPP on this version and installation was smooth. >>>>>> >>>>>> Regards, >>>>>> Amit Kumar Yadav >>>>>> Senior Research Fellow (SRF-CSIR) >>>>>> IGIB, New Delhi (India) >>>>>> >>>>>> http://masswiz.igib.res.in >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> On Wed, Mar 10, 2010 at 1:58 AM, Matthew Padula < >>>>>> [email protected]> wrote: >>>>>> >>>>>>> Hi Natalie. The other versions of ActivePerl will not let TPP >>>>>>> install, at least not the three different versions I tried yesterday >>>>>>> including 5.8.9.827. All came up with the message described in your >>>>>>> email. >>>>>>> If they have worked fine for other installs, what have I managed to do >>>>>>> wrong? The process seems fairly idiotproof. >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> Matt Padula (PhD). >>>>>>> >>>>>>> Technical Specialist. >>>>>>> >>>>>>> Proteomics Technology Centre of Expertise. >>>>>>> >>>>>>> University of Technology, Sydney. >>>>>>> >>>>>>> Level 6. Building 4. >>>>>>> >>>>>>> Cnr Harris St and Thomas St. >>>>>>> >>>>>>> Ultimo NSW 2007 >>>>>>> >>>>>>> Australia. >>>>>>> >>>>>>> Fax +61 2 9514 8206 >>>>>>> >>>>>>> Mob +61 (0)403 838 981 >>>>>>> >>>>>>> >>>>>>> >>>>>>> *From:* [email protected] [mailto: >>>>>>> [email protected]] *On Behalf Of *Natalie Tasman >>>>>>> *Sent:* Wednesday, 10 March 2010 5:31 AM >>>>>>> *To:* [email protected] >>>>>>> *Subject:* Re: [spctools-discuss] Active Perl 5.8.9.826 no longer >>>>>>> available >>>>>>> >>>>>>> >>>>>>> >>>>>>> I see that in the current TPP (4.3.1) installer, we say " TPP >>>>>>> requires ActivePerl version 5.8.8 or 5.10.x (available for free >>>>>>> ActiveState, >>>>>>> but we are not allowed to distribute it directly). Please install >>>>>>> ActivePerl >>>>>>> from [... ] and try the TPP installer again." However I see that the >>>>>>> links >>>>>>> we gave for ActiveState pointed to specific versions of Perl. We don't >>>>>>> have >>>>>>> any control over the ActiveState website, so the link shouldn't be so >>>>>>> specific and we should just point to the top of the ActiveState website >>>>>>> and >>>>>>> let the user find the perl downloads themselves. This was probably a >>>>>>> case >>>>>>> of trying to be helpful (by pointing to then-current Perl downloads >>>>>>> directly) and then getting bitten by changes in an external website. >>>>>>> >>>>>>> Thanks for pointing this out and we'll change the link for future >>>>>>> releases. For now, the text of the message remains true: any recent 5.8 >>>>>>> (5.8.8 or greater) or 5.10.x version will work fine. >>>>>>> >>>>>>> -Natalie >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> On 3/8/10 4:55 PM, Matt Padula wrote: >>>>>>> >>>>>>> Hi all. I have tried to install TPP on a different computer in the >>>>>>> >>>>>>> lab. On searching ActiveState's website for the required version of >>>>>>> >>>>>>> ActivePerl, I have discovered that it is no longer available. A quick >>>>>>> >>>>>>> search with Google for an alternative source of the installer has >>>>>>> >>>>>>> turned up nothing. Would anyone be able to direct me to a source? >>>>>>> >>>>>>> Version 5.8.9.827 does not work with the installer. >>>>>>> >>>>>>> >>>>>>> >>>>>>> With the publication of the papers recently, I think a few more people >>>>>>> >>>>>>> will be needing this. >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> -- >>>>>>> You received this message because you are subscribed to the Google >>>>>>> Groups "spctools-discuss" group. >>>>>>> To post to this group, send email to >>>>>>> [email protected]. >>>>>>> To unsubscribe from this group, send email to >>>>>>> [email protected]<spctools-discuss%[email protected]> >>>>>>> . >>>>>>> For more options, visit this group at >>>>>>> http://groups.google.com/group/spctools-discuss?hl=en. >>>>>>> UTS CRICOS Provider Code: 00099F >>>>>>> DISCLAIMER: This email message and any accompanying attachments may >>>>>>> contain confidential information. If you are not the intended >>>>>>> recipient, do >>>>>>> not >>>>>>> read, use, disseminate, distribute or copy this message or >>>>>>> attachments. If >>>>>>> you have received this message in error, please notify the sender >>>>>>> immediately >>>>>>> and delete this message. Any views expressed in this message are >>>>>>> those of the individual sender, except where the sender expressly, and >>>>>>> with >>>>>>> authority, >>>>>>> states them to be the views of the University of Technology Sydney. >>>>>>> Before >>>>>>> opening any attachments, please check them for viruses and defects. >>>>>>> >>>>>>> Think. Green. 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