Hi Amit, I had a discussion with senior management and we will be using Chrome or firefox which looks much better.
I am still trying to figure out point (b). Regards Val On Tue, Mar 16, 2010 at 7:55 PM, Amit Yadav <[email protected]>wrote: > Hi Vishal, > > If the command has run, then try using a text editor to open the xml files. > i am better off with commandline and text editors. Somehow I fail to get > the hang of interface (haven't devoted time there). > Faced the same problem (i have all latest browsers on my system). > Probably the file size is too much to handle for the browser. Try a text > editor, browsers aren't meant to deal with huge files. > > Regards, > > Amit Kumar Yadav > Senior Research Fellow (SRF-CSIR) > IGIB, New Delhi (India) > > http://masswiz.igib.res.in > > > > > On Wed, Mar 17, 2010 at 12:50 AM, Vishal Swaroop > <[email protected]>wrote: > >> Hi, >> >> Thanks for your time, some relief.... but few issues.... it will be nice >> if you have any clue. >> >> After clean installatin of "TPP_Setup_v4_3_JETSTREAM_rev_1", >> "ActivePerl-5.8.9.827-MSWin32-x86-291969" "Apache 2.2.14" on WinXP ver2002 >> sp2, I am somehow able to write data files to network drive. >> >> All the processes run fine, I can also see the files under specific path >> of Z: drive >> "*results written to file >> z:/Inetpub/wwwroot/ISB/data/SAN/Test_Executer/research/Test_ZZZ_interact.xml >> direct your browser to ** >> http://server123:1441/ISB/data/SAN/Test_Executer/research/Test_ZZZ_interact.shtml >> *<http://server123:1441/ISB/data/SAN/Test_Executer/research/Test_ZZZ_interact.shtml> >> " >> >> *Issue: >> *a) When I try to browse the above url, IE 6 hangs and I get the message >> At the top of the page I get the error: Messages >> "Unable to access xml file via webserver, so cannot check xml file for >> changes () Check webserver configuration if desired. (URL: undefined)" >> b) On each click and whon clicking "Run XInteract" button blank command >> window appears and closes, is it because of any classpath/ configuration >> issue >> >> Please suggest what I am missing.. >> >> httpd.conf >> -------------- >> *ServerRoot "C:/Program Files/Apache Software Foundation/Apache2.2"* >> *DocumentRoot "C:/Program Files/Apache Software >> Foundation/Apache2.2/htdocs" >> SetEnv WEBSERVER_ROOT Z:/Inetpub/wwwroot* >> ** >> *Alias /tpp-bin "C:/Inetpub/tpp-bin" >> <Directory "C:/Inetpub/tpp-bin"> >> AllowOverride All >> Options Indexes FollowSymLinks MultiViews ExecCGI Includes >> AddHandler default-handler .jpg .png .css .ico .gif >> AddHandler cgi-script .cgi .pl >> Order allow,deny >> Allow from all >> SetEnv WEBSERVER_ROOT Z:/Inetpub/wwwroot >> </Directory> >> * >> *Alias /ISB "Z:/Inetpub/wwwroot/ISB" >> <Directory "Z:/Inetpub/wwwroot/ISB"> >> AllowOverride None >> Options Includes Indexes FollowSymLinks MultiViews ExecCGI >> Order allow,deny >> Allow from all >> AddType text/html .shtml >> AddHandler server-parsed .shtml >> PassEnv WEBSERVER_ROOT >> </Directory> >> * >> *Alias /schema "C:/Inetpub/wwwroot/schema" >> <Directory "C:/Inetpub/wwwroot"> >> Options Indexes MultiViews Includes >> AllowOverride None >> Order allow,deny >> Allow from all >> AddType text/html .shtml >> AddHandler server-parsed .shtml >> PassEnv WEBSERVER_ROOT >> PassEnv WEBSERVER_TMP >> </Directory>* >> >> >> >> >> On Tue, Mar 16, 2010 at 11:12 AM, Amit Yadav >> <[email protected]>wrote: >> >>> Did you refresh the page? Sometimes the command has run and the browser >>> times out. Refreshing will show the actual status. If it didnt help, try >>> running xinteract from command line and give full file paths for your input >>> and output files. >>> Hope it helps. >>> >>> Regards, >>> >>> Amit Kumar Yadav >>> Senior Research Fellow (SRF-CSIR) >>> IGIB, New Delhi (India) >>> >>> http://masswiz.igib.res.in >>> >>> >>> >>> >>> On Tue, Mar 16, 2010 at 7:13 PM, Vishal Swaroop >>> <[email protected]>wrote: >>> >>>> Hi Amit, >>>> >>>> Thanks for the information. I am not sure if my issue is because of >>>> Active Perl version... but incase if you have any idea...? >>>> >>>> I am using "TPP_Setup_v4_3_JETSTREAM_rev_1", >>>> "ActivePerl-5.8.9.827-MSWin32-x86-291969", Apache 2.2.14 on "Win XP >>>> Professional Ver 2002 sp2". >>>> >>>> I am trying to write data files to mapped network drive (example Y:) and >>>> have exact copy from C:\Inetpub\wwwroot and C:\Inetpub\tpp-bin on Y: drive. >>>> >>>> When I click "Run XInteract" all processes work fine InteractParser, >>>> PeptideProphetParser, ProphetModels.pl, DatabaseParser, RefreshParser. >>>> >>>> But, it gets stuck on PepXMLViewer.cgi... *while creating *.xml.index*file >>>> forever.. >>>> >>>> "running: "Y:/Inetpub/wwwroot/../tpp-bin/PepXMLViewer.cgi -I >>>> y:/Inetpub/wwwroot/ISB/data/SAN/server1/Test_Executer/research/Test_2_interact.xml"" >>>> >>>> Output : It writes blank space >>>> 1.4 >>>> >>>> y:/Inetpub/wwwroot/ISB/data/SAN/server1/Test_Executer/research/Test_2_interact.xml >>>> .. >>>> 22 serialization::archive 5 0 0 0 126 >>>> y:/Inetpub/wwwroot/ISB/data/SAN/server1/Test_Executer/research/Test_2_interact.xml >>>> 0 0 0 1 8 spectrum 14 spectrum_query 0 0 1 50 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 >>>> 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 >>>> *** >>>> 1 >>>> 63886 >>>> <<< >>>> ... blank space and file continues to grow. >>>> >>>> >>>> >>>> >>>> >>>> On Tue, Mar 16, 2010 at 3:12 AM, Amit Yadav >>>> <[email protected]>wrote: >>>> >>>>> I am using TPP v 4.3 on Windows Vista Home premium (HP laptop) >>>>> ("TPP_Setup_v4_3_JETSTREAM_rev_0.exe" windows installer) and XP pro >>>>> service >>>>> pack 3. Both machines work fine and have the same Activeperl version i >>>>> mentioned. >>>>> >>>>> Regards, >>>>> >>>>> Amit Kumar Yadav >>>>> Senior Research Fellow (SRF-CSIR) >>>>> IGIB, New Delhi (India) >>>>> >>>>> http://masswiz.igib.res.in >>>>> >>>>> >>>>> >>>>> >>>>> On Tue, Mar 16, 2010 at 9:52 AM, Vishal Swaroop < >>>>> [email protected]> wrote: >>>>> >>>>>> Hi Amit, >>>>>> >>>>>> Which TPP version you are using? >>>>>> >>>>>> Regards >>>>>> Vishal >>>>>> >>>>>> On Tue, Mar 9, 2010 at 11:44 PM, Amit Yadav < >>>>>> [email protected]> wrote: >>>>>> >>>>>>> Hi Matt, >>>>>>> >>>>>>> Have you tried ActivePerl 5.10.1.build 1006 (this is one of the >>>>>>> recent builds about 3-4 months back i guess)? >>>>>>> I am running TPP on this version and installation was smooth. >>>>>>> >>>>>>> Regards, >>>>>>> Amit Kumar Yadav >>>>>>> Senior Research Fellow (SRF-CSIR) >>>>>>> IGIB, New Delhi (India) >>>>>>> >>>>>>> http://masswiz.igib.res.in >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> On Wed, Mar 10, 2010 at 1:58 AM, Matthew Padula < >>>>>>> [email protected]> wrote: >>>>>>> >>>>>>>> Hi Natalie. The other versions of ActivePerl will not let TPP >>>>>>>> install, at least not the three different versions I tried yesterday >>>>>>>> including 5.8.9.827. All came up with the message described in your >>>>>>>> email. >>>>>>>> If they have worked fine for other installs, what have I managed to do >>>>>>>> wrong? The process seems fairly idiotproof. >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> Matt Padula (PhD). >>>>>>>> >>>>>>>> Technical Specialist. >>>>>>>> >>>>>>>> Proteomics Technology Centre of Expertise. >>>>>>>> >>>>>>>> University of Technology, Sydney. >>>>>>>> >>>>>>>> Level 6. Building 4. >>>>>>>> >>>>>>>> Cnr Harris St and Thomas St. >>>>>>>> >>>>>>>> Ultimo NSW 2007 >>>>>>>> >>>>>>>> Australia. >>>>>>>> >>>>>>>> Fax +61 2 9514 8206 >>>>>>>> >>>>>>>> Mob +61 (0)403 838 981 >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> *From:* [email protected] [mailto: >>>>>>>> [email protected]] *On Behalf Of *Natalie Tasman >>>>>>>> *Sent:* Wednesday, 10 March 2010 5:31 AM >>>>>>>> *To:* [email protected] >>>>>>>> *Subject:* Re: [spctools-discuss] Active Perl 5.8.9.826 no longer >>>>>>>> available >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> I see that in the current TPP (4.3.1) installer, we say " TPP >>>>>>>> requires ActivePerl version 5.8.8 or 5.10.x (available for free >>>>>>>> ActiveState, >>>>>>>> but we are not allowed to distribute it directly). Please install >>>>>>>> ActivePerl >>>>>>>> from [... ] and try the TPP installer again." However I see that the >>>>>>>> links >>>>>>>> we gave for ActiveState pointed to specific versions of Perl. We don't >>>>>>>> have >>>>>>>> any control over the ActiveState website, so the link shouldn't be so >>>>>>>> specific and we should just point to the top of the ActiveState >>>>>>>> website and >>>>>>>> let the user find the perl downloads themselves. This was probably a >>>>>>>> case >>>>>>>> of trying to be helpful (by pointing to then-current Perl downloads >>>>>>>> directly) and then getting bitten by changes in an external website. >>>>>>>> >>>>>>>> Thanks for pointing this out and we'll change the link for future >>>>>>>> releases. For now, the text of the message remains true: any recent >>>>>>>> 5.8 >>>>>>>> (5.8.8 or greater) or 5.10.x version will work fine. >>>>>>>> >>>>>>>> -Natalie >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> On 3/8/10 4:55 PM, Matt Padula wrote: >>>>>>>> >>>>>>>> Hi all. I have tried to install TPP on a different computer in the >>>>>>>> >>>>>>>> lab. On searching ActiveState's website for the required version of >>>>>>>> >>>>>>>> ActivePerl, I have discovered that it is no longer available. A quick >>>>>>>> >>>>>>>> search with Google for an alternative source of the installer has >>>>>>>> >>>>>>>> turned up nothing. Would anyone be able to direct me to a source? >>>>>>>> >>>>>>>> Version 5.8.9.827 does not work with the installer. >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> With the publication of the papers recently, I think a few more people >>>>>>>> >>>>>>>> will be needing this. >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> -- >>>>>>>> You received this message because you are subscribed to the Google >>>>>>>> Groups "spctools-discuss" group. >>>>>>>> To post to this group, send email to >>>>>>>> [email protected]. >>>>>>>> To unsubscribe from this group, send email to >>>>>>>> [email protected]<spctools-discuss%[email protected]> >>>>>>>> . >>>>>>>> For more options, visit this group at >>>>>>>> http://groups.google.com/group/spctools-discuss?hl=en. >>>>>>>> UTS CRICOS Provider Code: 00099F >>>>>>>> DISCLAIMER: This email message and any accompanying attachments may >>>>>>>> contain confidential information. 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