Hi Andris and Charlie,
Overdue support for filter lines found in Exactive files has finally been added to ProteoWizard (as of r2087). Also there was a problem with parsing the
instrument model and that should also be fixed.
Thanks for your reports and for uploading the files.
-Matt
On 6/24/2010 3:46 PM, Zhenyu Chang wrote:
However, I have encountered the following problem when using msconvert tool. I was trying to convert a .RAW data generated by Thermo Fisher Exactive instrument
to mzML 1.1 data format.
On 11/17/2009 3:19 AM, Andris Jankevics wrote:
Hi Matt.
Thank you for your work, these data will be mostly metabolomics data
sets which will be analyzed by XCMS and several other software tools.
It would be nice to have functionality in ReAdW to extract only mzXML
file by based on scan event (for example only lock mass corrected
positive slice), but this is not so essential.
best regards,
Andris
On Mon, Nov 16, 2009 at 8:36 PM, Matthew Chambers
<[email protected]> wrote:
That file requires Xcalibur 2.1, which doesn't run on Windows 7 x64...I
had to use a Windows VM to view it. It indeed appears they've put scan
segment and scan event in the filter line, and have added a new keyword
("lock"). The lock keyword appears to only be applied if at least one of
the configured lock masses was found in the spectrum, in which case some
adjustment has been applied; otherwise, it won't have the lock keyword
and no adjustment is applied. It shouldn't be difficult to add support
for these changes, although I'm curious what you're planning to do with
this data once it's in mzXML format.
-Matt
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