Hi Jim,
The mzXML file is about 290 mb and has many scan entries that look
like other mzXML scan entries from files that I was able to run. There
are 19517 scans in this particular file. I copied an example of a scan
entry. Is there something else I should look for to confirm there are
ms/ms scans?
<scan num="19517"
scanEvent="1"
scanType="FULL"
centroided="1"
msLevel="1"
peaksCount="56"
polarity="+"
retentionTime="PT3000S"
lowMz="400.1986083984375"
highMz="1122.22021484375"
basePeakMz="444.97515869140625"
basePeakIntensity="1593.150634765625"
totIonCurrent="16308.9521484375"
msInstrumentID="IC1">
<peaks precision="64"
byteOrder="network"
pairOrder="m/z-
int">QHkDLYAAAABAUJxTgAAAAEB5RSjAAAAAQGgNbsAAAABAeVGLoAAAAEB1MZpAAAAAQHlmL4AAAABAezhpwAAAAEB5diBAAAAAQE60nWAAAABAeYODYAAAAEBiiDRAAAAAQHm7j2AAAABAdWpfQAAAAEB50oBgAAAAQFo8CIAAAABAegAA4AAAAEBjqfxAAAAAQHowO
+AAAABAfEVDIAAAAEB6Qa3AAAAAQFgOiSAAAABAemQ34AAAAEBkuQYAAAAAQHpzaUAAAABAU7N4YAAAAEB6nILgAAAAQF6QP4AAAABAez3lAAAAAEBRiknAAAAAQHttS4AAAABAWkAfwAAAAEB7tBXgAAAAQFxqm8AAAABAe8+aQAAAAECY5JpAAAAAQHvfvWAAAABAgTuT4AAAAEB78M8AAAAAQJiPG0AAAABAfADHQAAAAEB491fAAAAAQHwTYeAAAABAUaiuIAAAAEB8vkUgAAAAQGXQEWAAAABAfMjToAAAAEBhcqpgAAAAQHzfGmAAAABAd
+U1QAAAAEB9T6RAAAAAQFgN/
YAAAABAfbTBgAAAAEBm8pugAAAAQH3jvCAAAABAU7bDoAAAAEB/
jrbAAAAAQFpBIkAAAABAf6+sQAAAAEBTt3CAAAAAQIA3s
+AAAABAlC9QwAAAAECAP4jAAAAAQJGW5eAAAABAgEc8AAAAAEBtaqVAAAAAQIBPsIAAAABAY6MpQAAAAECAqPwgAAAAQFgB0KAAAABAgoZ2QAAAAECJzGQgAAAAQIKPLgAAAABAgZ/
ZIAAAAECClyrAAAAAQHzKF2AAAABAgp9D4AAAAEBaPRcAAAAAQIMX/
kAAAABAWFEIIAAAAECE0teAAAAAQHZgxqAAAABAhOFzgAAAAEBusFlAAAAAQITnvYAAAABAaieu4AAAAECE9cWAAAAAQFXg6mAAAABAhx2egAAAAEBV2+iAAAAAQIcmRYAAAABAhJ9RoAAAAECHLfDAAAAAQGoudEAAAABAh0UUoAAAAEBWAzyAAAAAQIdbKcAAAABAWjoogAAAAECJdC4AAAAAQHQtpoAAAABAiYTRwAAAAEBaPJSgAAAAQImdxoAAAABAVeIAYAAAAECKFzbAAAAAQEpqGOAAAABAi9YBoAAAAEBRuA3AAAAAQJA/
PiAAAABAWjof4AAAAECRiOGAAAAAQFO1l8AAAAA=</peaks>
</scan>
On Jul 20, 9:53 am, Jimmy Eng <[email protected]> wrote:
> Tom, possible there are no ms/ms scans in this raw file?
>
> On Mon, Jul 19, 2010 at 2:01 PM, tommyg <[email protected]> wrote:
> > Hello,
>
> > I'm getting a "No input spectra met the acceptance criteria" error
> > while running the latest version of X!Tandem on a 64-bit Intel(R)
> > Core(TM)2 Duo CPU E6550 @ 2.33GHz running Fedora 11.
>
> > I've successfully run many other .pkl files, but for this
> > particular .RAW file (D2.raw), I was not able to convert it to a .pkl.
> > I was able to convert it to D2.mzXML or D2.mzML file using TPP/
> > msconvert, but still getting the error when running XTandem on these
> > files. Additionally, I cannot convert the mzXML to pkl (or any other
> > format) using MzXML2Search.
>
> > I was able to convert other .raw files to mzXML, and then to pkl, and
> > I was able to run these files successfully on XTandem. So this is
> > specific to this one particular D2.raw/D2.mzXML file.It appears that
> > there are spectra. Any ideas?
> > I can upload the mzXML file if it would help.
>
> > Thanks,
> > Tom
>
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