c:\Inetpub\tpp-bin\ProteinProphet c:/Inetpub/wwwroot/ISB/data/
mito_p2_phospho_hetero_I/interact.iproph.pep.xml c:/Inetpub/wwwroot/
ISB/data/mito_p2_phospho_hetero_I/interact.prot.xml
--------------------------------------------------------------------------------

ProteinProphet (C++) by Insilicos LLC and LabKey Software, after the
original Perl by A. Keller (TPP v4.3 JETSTREAM rev 1, Build
200909091257 (MinGW))
 (xml input) (report Protein Length) (using degen pep info)
. . . reading in c:/Inetpub/wwwroot/ISB/data/mito_p2_phospho_hetero_I/
interact.iproph.pep.xml. . .
. . . read in 0 1+, 1147 2+, 501 3+, 12 4+, 0 5+, 0 6+, 0 7+ spectra
with min prob 0.05
cannot open DB C:\XCalibur\database
\ipi_HUMAN_v3_74_withcontaminants_FRF

above all  message

because of Xcalibur program ?

I don't know this problem.

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