It looks like the software did its job. The 500 IDs are probably all or almost all wrong. You have to check your data and search parameters to debug this further.
On Wed, Aug 11, 2010 at 2:13 AM, bio4647 <[email protected]> wrote: > HI David I' want to solve this problem > > When viewing ProteinProphet results generated from an iProphet > > analysis with the protXML viewer (v 4.3.) > > protein prophet result is 0 total peptides, 0 unique stripped > peptides > > in iprophet result, 500 peptide Id but after protein prophet , above > result. > > And iprophet validation peptide'500 peptide's probability is all 0 > value. so all cut off peptide. > > i want to know other protein prophet parameter or solving method. > for iprophet' result > > thank you. > > > > > > > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]. > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
