>From the output below, it looks like you do not have the gnuplot software installed (the ProteinProphet output contains a line stating, "sh: gnuplot: command not found " ).
Install gnuplot, try it again and ProteinProphet should work. -Brian On Aug 10, 6:23 pm, bio4647 <[email protected]> wrote: > I' want to convert CPAS pep.xml --> TPP protein prophet > > but error message > > ProteinProphet /usr/local/apache2/htdocs/data/test_2_interact.pep.xml / > usr/local/apache2/htdocs/data/test_2_1_interact.prot.xml > -------------------------------------------------------------------------------- > > ProteinProphet (C++) by Insilicos LLC and LabKey Software, after the > original Perl by A. Keller (TPP v4.3 JETSTREAM rev 1, Build > 201008061922 (linux)) > (xml input) (report Protein Length) (using degen pep info) > . . . reading in /usr/local/apache2/htdocs/data/ > test_2_interact.pep.xml. . . > . . . read in 0 1+, 53 2+, 0 3+, 8 4+, 0 5+, 0 6+, 0 7+ spectra with > min prob 0.05 > sh: gnuplot: command not found > INFO: mu=3.02439e-08, db_size=143584001 > > protein probabilities written to file /usr/local/apache2/htdocs/data/ > test_2_1_interact.prot.xml > direct your browser > tohttp://192.168.170.205//usr/local/apache2/htdocs/data/test_2_1_intera... > > command "gnuplot "/tmp/test_2_1_interact.prot.png.script.tmp.HxQaZB"" > failed with exit code 32512 > ProteinProphet: png file /usr/local/apache2/htdocs/data/ > test_2_1_interact.prot.png not written, error code 32512 -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
