Hi Damaris, I should note that one of the features to which Birgit refers, the m/z value annotations was recently added to my development release for Birgit to test, and will not be freely available in the public release until I make the next public release, which I expect to be a little over 2 weeks from now. Before then, Birgit and I will be at a meeting where we will try to discuss this approach with an MCP editor who has expressed interest in this idea in the past.
Skyline does support building these libraries from pepXML and mzXML from the TPP, as well as directly from Mascot .dat file, X! Tandem XML, Protein Pilot .group files, etc. We'll probably add a step-by- step instruction page, once we are sure this will be acceptable to MCP, but this will still likely be a couple weeks. If you are interested, you could play around with building your library now. --Brendan On Aug 23, 4:43 pm, Birgit <[email protected]> wrote: > Hi Damaris, > > I actually often have similar considerations. I recently worked with > Brendan MacLean from the Open Source Program Skyline (MacCoss lab) > which is a freely available software. It is available under > > Skyline :http://proteome.gs.washington.edu/software/skyline, B. > MacLean, M.J. MacCoss et al > > One can import spectral libraries from any discovery datasets in a > very straightforward way, and then display the MSMS from any of the > identified peptides in an interactive way, with fragment ions > annotated with ion types and observed m/z values. As far as I know > recently MCP also allows for "Spectral Viewers", which Skyline should > qualify for. > > Let me know if you are interested or Brendan MacLean can also be of > help in this ...., one can contact Brendan through > his support page that is part of the Skyline > homepage:https://brendanx-uw1.gs.washington.edu/labkey/project/home/support/be... > > Regards, > Birgit > > On Aug 22, 1:43 pm, Damaris Bausch <[email protected]> wrote: > > > Hi, > > For a MCP publication I need to export all MS/MS spectras into images. > > Is there somewhere a script available that does that autimatically? > > The data has been processed with the TPP. > > > Thanks, > > Damaris -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
