The fix posted by Bjorn did the job on Redhat as well.

Cheers,
Alex

On Aug 17, 6:22 pm, Joe Slagel <[email protected]> wrote:
> Alex,
>
> Will look into the problem.  In the meantime try unsetting your JAVA_HOME
> environment variable before running make.  This should skip building the
> java components.
>
> -Joe
>
>
>
>
>
> On Tue, Aug 17, 2010 at 6:49 AM, Alex <[email protected]> wrote:
> > Hi Guys,
>
> > I'm getting the following error when building the TPP on Linux for
> > PepcView which then stops the process. Any ideas what is wrong ?
>
> > Cheers,
> > Alex
>
> > rm -rf Quantitation/Pepc/PepcView/GWTCompilerOutputpepcview/
> > com.insilicos.PepcView/*
> > export CLASSPATH="" ;  ant -f Quantitation/Pepc/PepcView/build.xml
> > compile.gwt.pepcview
> > Buildfile: Quantitation/Pepc/PepcView/build.xml
>
> > compile.module.pepcview.production:
>
> > compile.module.pepcview.tests:
>
> > compile.module.pepcview:
>
> > compile.gwt.pepcview:
>
> > run.gwt.compiler.pepcview:
> >     [java] #
> >     [java] # An unexpected error has been detected by Java Runtime
> > Environment:
> >     [java] #
> >     [java] #  SIGSEGV (0xb) at pc=0x00002aaaaadce22a, pid=31127,
> > tid=1090619712
> >     [java] #
> >     [java] # Java VM: Java HotSpot(TM) 64-Bit Server VM (10.0-b19
> > mixed mode linux-amd64)
> >     [java] # Problematic frame:
> >     [java] # V  [libjvm.so+0x1f122a]
> >     [java] #
> >     [java] # An error report file with more information is saved as:
> >     [java] # /usr/local/tpp/sources/tpp_440/src/Quantitation/Pepc/
> > PepcView/hs_err_pid31127.log
> >     [java] #
> >     [java] # If you would like to submit a bug report, please visit:
> >     [java] #  http://java.sun.com/webapps/bugreport/crash.jsp
> >     [java] # The crash happened outside the Java Virtual Machine in
> > native code.
> >     [java] # See problematic frame for where to report the bug.
> >     [java] #
> >     [java] Java Result: 134
>
> > BUILD SUCCESSFUL
> > Total time: 7 seconds
> > mkdir -p /usr/local/tpp/sources/tpp_440/src/../build/linux/PepcView
> > rm -f /usr/local/tpp/sources/tpp_440/src/../build/linux/PepcView/*
> > cp -f Quantitation/Pepc/PepcView/GWTCompilerOutputpepcview/
> > com.insilicos.PepcView/* /usr/local/tpp/sources/tpp_440/src/../build/
> > linux/PepcView
> > cp: cannot stat `Quantitation/Pepc/PepcView/GWTCompilerOutputpepcview/
> > com.insilicos.PepcView/*': No such file or directory
> > make: *** [/usr/local/tpp/sources/tpp_440/src/../build/linux/PepcView/
> > PepcView.html] Error 1
>
> > --
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>
> --
> Joe Slagel
> Institute for Systems Biology
> [email protected]
> (206) 732-1362- Hide quoted text -
>
> - Show quoted text -

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