Regarding the wiki page: it is indeed just incidental that it includes no
testing on Waters data.
The snapshot is rebuilt with Waters support (via DAC DLLs) and working with my
tests:
http://teamcity.labkey.org:8080/viewLog.html?buildId=17942&tab=artifacts&buildTypeId=bt77&guest=1
Keep in mind that just like MassWolf, the pwiz Reader_Waters has no vendor peak picking for profile data. So if you want centroids from your profile data, the
only thing msconvert can do is use the very rough pwiz local maximum algorithm (which needs additional signal filtering before it works with any semblance of
sanity).
-Matt
On 8/24/2010 10:31 AM, chr12is wrote:
It doesnt actually say that, I just assumed as there was no
information for Waters on this page:
http://tools.proteomecenter.org/wiki/index.php?title=Msconvert_Capabilities
Thats great news though, let me know when the snapshot is updated so I
can start running some files.
Thanks for the help!
Chris
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