Andres, I should have paid a little more attention to your email....
Boost does come with tpp -- its in the extern directory. As Matt says I'd look to see if another boost is getting in the way, though by the paths in the log it looks correct. I'm also curious as to why you got this message: * * *make[1]: warning: jobserver unavailable: using -j1. Add `+' to parent make rule.* Its occurring when trying to build gzstream, which is invoked as a "submake". Ok, I think I see what the problem might be. When you invoked make, you specified to use 5 parallel jobs. I'd recommend against this for TPP as its comprised of a network of different components dependent on each other. -Joe On Wed, Aug 25, 2010 at 11:17 AM, Andreas Quandt <[email protected]>wrote: > hey matt, > > for my knowledge, there is no further boost library installed but i will > check back with the admins of the system. > but does not come the tpp install with an own boost installation? i checked > the requirement file and there boost was not mentioned as requirement.... > > > cheers, > andreas > > On Wed, Aug 25, 2010 at 8:08 PM, Matthew Chambers < > [email protected]> wrote: > >> Is there a boost package installed on that machine? What version? >> >> -Matt >> >> >> >> On 8/25/2010 12:45 PM, Andreas Quandt wrote: >> >>> hey joe, >>> >>> thanks for picking up on this! >>> the output of the make.log was attached to my original request but as far >>> as i could see it did not contain any errors except the ones related to >>> boost which occur almost at the very first beginning of the make process: >>> >>> In file included from >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/singleton.hpp:18, >>> from >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/pwiz/data/proteome/AminoAcid.cpp:33: >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:31:68: >>> error: boost/function_types/is_member_function_pointer.hpp: No such file or >>> directory >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:32:56: >>> error: boost/function_types/function_arity.hpp: No such file or directory >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:33:53: >>> error: boost/function_types/result_type.hpp: No such file or directory >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:34:57: >>> error: boost/function_types/parameter_types.hpp: No such file or directory >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:48: >>> error: ‘boost::function_types’ has not been declared >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:48: >>> error: expected primary-expression before ‘>’ token >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:48: >>> error: expected constructor, destructor, or type conversion before ‘,’ token >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:54: >>> error: ‘member_dereference’ is not a template >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:64: >>> error: ‘function_types’ has not been declared >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:64: >>> error: expected unqualified-id before ‘<’ token >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:66: >>> error: expected type-specifier before ‘type’ >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:84: >>> error: wrong number of template arguments (4, should be 3) >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:54: >>> error: provided for ‘template<class C, class T, class MPC> class >>> boost::detail::member_dereference’ >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:84: >>> error: wrong number of template arguments (4, should be 3) >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:54: >>> error: provided for ‘template<class C, class T, class MPC> class >>> boost::detail::member_dereference’ >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:84: >>> error: wrong number of template arguments (4, should be 3) >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:54: >>> error: provided for ‘template<class C, class T, class MPC> class >>> boost::detail::member_dereference’ >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:84: >>> error: wrong number of template arguments (4, should be 3) >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:54: >>> error: provided for ‘template<class C, class T, class MPC> class >>> boost::detail::member_dereference’ >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:84: >>> error: wrong number of template arguments (4, should be 3) >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:54: >>> error: provided for ‘template<class C, class T, class MPC> class >>> boost::detail::member_dereference’ >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:84: >>> error: wrong number of template arguments (4, should be 3) >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:54: >>> error: provided for ‘template<class C, class T, class MPC> class >>> boost::detail::member_dereference’ >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:84: >>> error: wrong number of template arguments (4, should be 3) >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:54: >>> error: provided for ‘template<class C, class T, class MPC> class >>> boost::detail::member_dereference’ >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:84: >>> error: wrong number of template arguments (4, should be 3) >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:54: >>> error: provided for ‘template<class C, class T, class MPC> class >>> boost::detail::member_dereference’ >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:84: >>> error: wrong number of template arguments (4, should be 3) >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:54: >>> error: provided for ‘template<class C, class T, class MPC> class >>> boost::detail::member_dereference’ >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:84: >>> error: wrong number of template arguments (4, should be 3) >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:54: >>> error: provided for ‘template<class C, class T, class MPC> class >>> boost::detail::member_dereference’ >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:84: >>> error: wrong number of template arguments (4, should be 3) >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:54: >>> error: provided for ‘template<class C, class T, class MPC> class >>> boost::detail::member_dereference’ >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/singleton.hpp:101: >>> error: wrong number of template arguments (2, should be 3) >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:54: >>> error: provided for ‘template<class C, class T, class MPC> class >>> boost::detail::member_dereference’ >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/singleton.hpp: >>> In member function ‘int boost::singleton<Derived, DisposalSlot, >>> SubsystemTag>::instance_proxy::operator->*(MP) const’: >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/singleton.hpp:104: >>> error: wrong number of template arguments (2, should be 3) >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:54: >>> error: provided for ‘template<class C, class T, class MPC> class >>> boost::detail::member_dereference’ >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/singleton.hpp: >>> At global scope: >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/singleton.hpp:176: >>> error: wrong number of template arguments (2, should be 3) >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:54: >>> error: provided for ‘template<class C, class T, class MPC> class >>> boost::detail::member_dereference’ >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/singleton.hpp: >>> In member function ‘int boost::singleton<Derived, DisposalSlot, >>> SubsystemTag>::lease::operator->*(MP) const’: >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/singleton.hpp:179: >>> error: wrong number of template arguments (2, should be 3) >>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:54: >>> error: provided for ‘template<class C, class T, class MPC> class >>> boost::detail::member_dereference’ >>> make: *** [/cluster/apps/tpp/4.4.0/src/../build/linux/AminoAcid.pwiz.o] >>> Error 1 >>> >>> >>> cheers, >>> andreas >>> >>> On Wed, Aug 25, 2010 at 7:39 PM, Joe Slagel >>> <[email protected]<mailto: >>> [email protected]>> wrote: >>> >>> Andreas, >>> >>> It looks like ASAPRatioPeptideParser may not have been built. Are >>> there any errors in the make.log file pertaining to it? >>> >>> -Joe >>> >>> >>> -- >>> You received this message because you are subscribed to the Google Groups >>> "spctools-discuss" group. >>> To post to this group, send email to [email protected]. >>> To unsubscribe from this group, send email to >>> [email protected]<spctools-discuss%[email protected]> >>> . >>> For more options, visit this group at >>> http://groups.google.com/group/spctools-discuss?hl=en. >>> >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To post to this group, send email to [email protected]. >> To unsubscribe from this group, send email to >> [email protected]<spctools-discuss%[email protected]> >> . >> For more options, visit this group at >> http://groups.google.com/group/spctools-discuss?hl=en. >> >> > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]<spctools-discuss%[email protected]> > . > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > -- Joe Slagel Institute for Systems Biology [email protected] (206) 732-1362 -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
