hey joe, you solved it! apparently the difficulties were caused by the 'make -j5'. after a normal make & make install the installation finished without obvious error :-) but i will have to run some tests to justify the setup...
cheers, andreas On Wed, Aug 25, 2010 at 10:04 PM, Joe Slagel <[email protected]>wrote: > Andres, > > I should have paid a little more attention to your email.... > > Boost does come with tpp -- its in the extern directory. As Matt says I'd > look to see if another boost is getting in the way, though by the paths in > the log it looks correct. > > I'm also curious as to why you got this message: > > * > * > *make[1]: warning: jobserver unavailable: using -j1. Add `+' to parent > make rule.* > > Its occurring when trying to build gzstream, which is invoked as a > "submake". Ok, I think I see what the problem might be. When you invoked > make, you specified to use 5 parallel jobs. I'd recommend against this for > TPP as its comprised of a network of different components dependent on each > other. > > -Joe > > > On Wed, Aug 25, 2010 at 11:17 AM, Andreas Quandt <[email protected] > > wrote: > >> hey matt, >> >> for my knowledge, there is no further boost library installed but i will >> check back with the admins of the system. >> but does not come the tpp install with an own boost installation? i >> checked the requirement file and there boost was not mentioned as >> requirement.... >> >> >> cheers, >> andreas >> >> On Wed, Aug 25, 2010 at 8:08 PM, Matthew Chambers < >> [email protected]> wrote: >> >>> Is there a boost package installed on that machine? What version? >>> >>> -Matt >>> >>> >>> >>> On 8/25/2010 12:45 PM, Andreas Quandt wrote: >>> >>>> hey joe, >>>> >>>> thanks for picking up on this! >>>> the output of the make.log was attached to my original request but as >>>> far as i could see it did not contain any errors except the ones related to >>>> boost which occur almost at the very first beginning of the make process: >>>> >>>> In file included from >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/singleton.hpp:18, >>>> from >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/pwiz/data/proteome/AminoAcid.cpp:33: >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:31:68: >>>> error: boost/function_types/is_member_function_pointer.hpp: No such file or >>>> directory >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:32:56: >>>> error: boost/function_types/function_arity.hpp: No such file or directory >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:33:53: >>>> error: boost/function_types/result_type.hpp: No such file or directory >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:34:57: >>>> error: boost/function_types/parameter_types.hpp: No such file or directory >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:48: >>>> error: ‘boost::function_types’ has not been declared >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:48: >>>> error: expected primary-expression before ‘>’ token >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:48: >>>> error: expected constructor, destructor, or type conversion before ‘,’ >>>> token >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:54: >>>> error: ‘member_dereference’ is not a template >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:64: >>>> error: ‘function_types’ has not been declared >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:64: >>>> error: expected unqualified-id before ‘<’ token >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:66: >>>> error: expected type-specifier before ‘type’ >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:84: >>>> error: wrong number of template arguments (4, should be 3) >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:54: >>>> error: provided for ‘template<class C, class T, class MPC> class >>>> boost::detail::member_dereference’ >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:84: >>>> error: wrong number of template arguments (4, should be 3) >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:54: >>>> error: provided for ‘template<class C, class T, class MPC> class >>>> boost::detail::member_dereference’ >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:84: >>>> error: wrong number of template arguments (4, should be 3) >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:54: >>>> error: provided for ‘template<class C, class T, class MPC> class >>>> boost::detail::member_dereference’ >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:84: >>>> error: wrong number of template arguments (4, should be 3) >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:54: >>>> error: provided for ‘template<class C, class T, class MPC> class >>>> boost::detail::member_dereference’ >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:84: >>>> error: wrong number of template arguments (4, should be 3) >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:54: >>>> error: provided for ‘template<class C, class T, class MPC> class >>>> boost::detail::member_dereference’ >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:84: >>>> error: wrong number of template arguments (4, should be 3) >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:54: >>>> error: provided for ‘template<class C, class T, class MPC> class >>>> boost::detail::member_dereference’ >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:84: >>>> error: wrong number of template arguments (4, should be 3) >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:54: >>>> error: provided for ‘template<class C, class T, class MPC> class >>>> boost::detail::member_dereference’ >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:84: >>>> error: wrong number of template arguments (4, should be 3) >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:54: >>>> error: provided for ‘template<class C, class T, class MPC> class >>>> boost::detail::member_dereference’ >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:84: >>>> error: wrong number of template arguments (4, should be 3) >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:54: >>>> error: provided for ‘template<class C, class T, class MPC> class >>>> boost::detail::member_dereference’ >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:84: >>>> error: wrong number of template arguments (4, should be 3) >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:54: >>>> error: provided for ‘template<class C, class T, class MPC> class >>>> boost::detail::member_dereference’ >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:84: >>>> error: wrong number of template arguments (4, should be 3) >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:54: >>>> error: provided for ‘template<class C, class T, class MPC> class >>>> boost::detail::member_dereference’ >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/singleton.hpp:101: >>>> error: wrong number of template arguments (2, should be 3) >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:54: >>>> error: provided for ‘template<class C, class T, class MPC> class >>>> boost::detail::member_dereference’ >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/singleton.hpp: >>>> In member function ‘int boost::singleton<Derived, DisposalSlot, >>>> SubsystemTag>::instance_proxy::operator->*(MP) const’: >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/singleton.hpp:104: >>>> error: wrong number of template arguments (2, should be 3) >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:54: >>>> error: provided for ‘template<class C, class T, class MPC> class >>>> boost::detail::member_dereference’ >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/singleton.hpp: >>>> At global scope: >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/singleton.hpp:176: >>>> error: wrong number of template arguments (2, should be 3) >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:54: >>>> error: provided for ‘template<class C, class T, class MPC> class >>>> boost::detail::member_dereference’ >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/singleton.hpp: >>>> In member function ‘int boost::singleton<Derived, DisposalSlot, >>>> SubsystemTag>::lease::operator->*(MP) const’: >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/singleton.hpp:179: >>>> error: wrong number of template arguments (2, should be 3) >>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/detail/member_dereference.hpp:54: >>>> error: provided for ‘template<class C, class T, class MPC> class >>>> boost::detail::member_dereference’ >>>> make: *** [/cluster/apps/tpp/4.4.0/src/../build/linux/AminoAcid.pwiz.o] >>>> Error 1 >>>> >>>> >>>> cheers, >>>> andreas >>>> >>>> On Wed, Aug 25, 2010 at 7:39 PM, Joe Slagel >>>> <[email protected]<mailto: >>>> [email protected]>> wrote: >>>> >>>> Andreas, >>>> >>>> It looks like ASAPRatioPeptideParser may not have been built. Are >>>> there any errors in the make.log file pertaining to it? >>>> >>>> -Joe >>>> >>>> >>>> -- >>>> You received this message because you are subscribed to the Google >>>> Groups "spctools-discuss" group. >>>> To post to this group, send email to [email protected]. >>>> To unsubscribe from this group, send email to >>>> [email protected]<spctools-discuss%[email protected]> >>>> . >>>> For more options, visit this group at >>>> http://groups.google.com/group/spctools-discuss?hl=en. >>>> >>> >>> -- >>> You received this message because you are subscribed to the Google Groups >>> "spctools-discuss" group. >>> To post to this group, send email to [email protected]. >>> To unsubscribe from this group, send email to >>> [email protected]<spctools-discuss%[email protected]> >>> . >>> For more options, visit this group at >>> http://groups.google.com/group/spctools-discuss?hl=en. >>> >>> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To post to this group, send email to [email protected]. >> To unsubscribe from this group, send email to >> [email protected]<spctools-discuss%[email protected]> >> . >> For more options, visit this group at >> http://groups.google.com/group/spctools-discuss?hl=en. >> > > > > -- > Joe Slagel > Institute for Systems Biology > [email protected] > (206) 732-1362 > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]<spctools-discuss%[email protected]> > . > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. 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