Hi All. I recently re-installed TPP to new hardware, and would like my data drive set to d: for wwwroot.
Upon making all the suggested changes (http.conf, webserver_root, tpp_gui.pl) the software is hanging at pepxmlviewer.cgi during xinteract. Interestingly, the webserver root environment variable is not passed to the command (last line). The command block that has been giving me this error follows, with the final command showing the reference to c:\wwwroot instead of the intended d:\wwwroot. Additional errors include webserver-root errors peppered throughout the following log. Is there anything additional I may have missed to get this working? Thanks!!! # Commands for session VMEAWVVHD on Wed Sep 1 07:08:15 2010 # BEGIN COMMAND BLOCK ###### BEGIN Command Execution ###### [Wed Sep 1 07:08:15 2010] EXECUTING: run_in d:/Inetpub/wwwroot/ISB/ data/test; c:\Inetpub\tpp-bin\xinteract -Ninteract.pep.xml -p0.05 -l7 -O d:/Inetpub/wwwroot/ISB/data/test/BBMV_ID1.tandem.pep.xml OUTPUT: c:\Inetpub\tpp-bin\xinteract (TPP v4.4 VUVUZELA rev 0, Build 201008161532 (MinGW)) running: "C:/Inetpub/tpp-bin/InteractParser "interact.pep.xml" "d:/ Inetpub/wwwroot/ISB/data/test/BBMV_ID1.tandem.pep.xml" -L"7"" warning: xsl file d:/inetpub/wwwroot/ISB/data/test/interact.pep.xsl must begin with the WEBSERVER_ROOT path for use with a webserver. file 1: d:/Inetpub/wwwroot/ISB/data/test/BBMV_ID1.tandem.pep.xml processed altogether 1894 results problem (ph8): d:/Inetpub/wwwroot/ISB/data/test/interact.pep.xml is not mounted under webserver root: c:/Inetpub/wwwroot/ command completed in 1 sec running: "C:/Inetpub/tpp-bin/PeptideProphetParser "interact.pep.xml" MINPROB=0.05" (X! Tandem (k-score)) init with X! Tandem (k-score) trypsin MS Instrument info: Manufacturer: Agilent, Model: AGILENT TOF, Ionization: MS_CHIP, Analyzer: QTOF, Detector: unknown PeptideProphet (TPP v4.4 VUVUZELA rev 0, Build 201008161532 (MinGW)) akel...@isb read in 0 1+, 1843 2+, 20 3+, 10 4+, 0 5+, 0 6+, and 0 7+ spectra. Initialising statistical models ... negmean = 0.0533258 negmean = -0.638858 negmean = -0.650452 negmean = -0.0954922 negmean = -0.2 negmean = -0.2 negmean = -0.2 Iterations: .........10.........20. model complete after 22 iterations command completed in 0 sec running: "C:/Inetpub/tpp-bin/ProphetModels.pl -i interact.pep.xml" Analyzing interact.pep.xml ... Parsing search results "d:/Inetpub/wwwroot/ISB/data/test/BBMV_ID1 (X! Tandem (k-score))"... => Total of 1293 hits. command completed in 1 sec running: "C:/Inetpub/tpp-bin/DatabaseParser "interact.pep.xml"" command completed in 1 sec running: "C:/Inetpub/tpp-bin/RefreshParser "interact.pep.xml" "d:/ Inetpub/wwwroot/ISB/data/dbase/BMV_Temporal.fasta"" - Searching the tree... - Linking duplicate entries... - Printing results... - Building Commentz-Walter keyword tree...command completed in 1 sec running: "c:/Inetpub/wwwroot/../tpp-bin/PepXMLViewer.cgi -I d:/Inetpub/ wwwroot/ISB/data/test/interact.pep.xml" -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
