Nice! I did a lengthy check as well just to be sure and found the same
thing, including msconvert MzXMLs as well. Unfortunately, I wasn't
here when we set our wine readw system up so I don't really know what
went into it.

On Nov 5, 1:29 pm, dctrud <[email protected]> wrote:
> Just read this post and though I'd check our wine ReAdW output vs
> native XP using diff. Like Jeffrey we're using Trapper and ReAdW on
> Ubuntu (10.04 LTS), wine version 1.2. Were previously using it on
> Ubuntu 9.04 for over a year, with whatever version of wine that had.
> Never had any problems using the MzXMLs converted through wine, and
> it's *very* nice to be able to do it on a fast server directly
> connected to the main data storage array rather than on a windows
> desktop.
>
> sha1 hashes for the files are different, but diff shows that the only
> differences are:
>
> 1) parentFile tag has a different filename attribute (since the .RAW
> is in a different place)
> 2) all of the <offset> values are sightly different, because the
> parentFile filename attribute is a few bytes different
> 3) <indexOffset> is different (again due to the filename difference)
> 4) <sha1> is different due to the above differences between the files.
>
> Other than this the wine version and windows version of the mzXML are
> identical. No differences at all in any of the markup or encoded
> spectra other than for the tags listed above.
>
> Cheers,
>
> DT
>
> On Oct 14, 11:47 pm, Natalie Tasman <[email protected]>
> wrote:
>
>
>
>
>
>
>
> > Have you done comparisons between mzXML output from your WINE
> > installation and a native Windows environment?  I would expect that
> > there will be some subtle but important differences between the two.
> > Like I've said before on this list, and as Matt stated on this thread,
> > if you have this working 100% completely it's the first time it's been
> > reported.  Nice job if so.
>
> > -Natalie
>
> > On Thu, Oct 14, 2010 at 11:14 AM, Jeffrey Milloy
>
> > <[email protected]> wrote:
> > > XCalibur and ReAdW have been running in wine for more than two years
> > > now, through several ubuntu upgrades and wine updates. Seems totally
> > > stable, although now I'm hesitant to update XCalibur and ReADdW to
> > > current versions! This is one reason why I figure this is a reasonably
> > > route for adding my own functionality.
>
> > > On Oct 14, 2:06 pm, Matthew Chambers <[email protected]>
> > > wrote:
> > >>   I wouldn't recommend getting your hopes up on using XRawfile (a COM 
> > >> interface to an MFC library) with Wine. I have not heard of anyone able 
> > >> to do this and
> > >> reproduce it reliably on other machines. It may only work with a narrow 
> > >> set of Wine versions, kernel version, x86 emulation, etc. Your time 
> > >> would probably be
> > >> better spent creating a true Windows VM to do this. On the other hand, 
> > >> if anybody is able to do this reliably and I just haven't heard about 
> > >> it, I sure would
> > >> like to know.
>
> > >> -Matt
>
> > >> On 10/14/2010 12:56 PM, Jeffrey Milloy wrote:
>
> > >> > I'm having a hard time building tpp. My interest in the tpp source is
> > >> > in reading XRawfile metadata using c++. If anyone has a different
> > >> > suggestion for using the XRawfile2 DLL with c++ I would be grateful.
> > >> > C# won't work for me because I want to run the code in wine/mono and
> > >> > CSLID is not supported in mono.
>
> > > --
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