Hi, I am not very sure of peptide prophet probability calculation method (never really made an attempt ). But u may try this link. You ll get slides by Brian Searle plus the references - http://www.proteomesoftware.com/Proteome_software_pro_pep_prophet.html
Regards, Amit Kumar Yadav Senior Research Fellow (SRF-CSIR) IGIB, New Delhi (India) MassWiz Web server MassWiz sourceforge project MassWiki On Wed, Nov 24, 2010 at 7:52 PM, Bjorn <[email protected]> wrote: > > Thanks for the fast reply! > > In my case that would then be: 100/1200. That is about double the FDR > I had before and double the one that was stated in the PeptideProphet > for that probability. > How is probability calculated for PeptideProphet? (Can you point me to > an article or webpage or anything... It's been plaguing me for a while > now...)? > > bjorn > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]. > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
