Hello everybody, I'm new to this group and in fact rather new to proteome data analysis as a whole.
We are using Thermo's proteome discoverer at the lab, which gives .msf output files. I wanted to try the Ascore program to see whether this could help in localizing the phosphorylation site in peptides we measured. but this requires pepXML input. I've tried to find a converter for .msf into pepXML but it doesn't seem to exist, is that right? is there any possibility to extract a SEQUEST .out file from within proteome discoverer or any work-around to create pepXML from proteome discoverer results through other data output formats? thanks kindly for any help! Thomas student, University of Antwerp, Belgium -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
