Hi~ I met the same problem recently. I used the Mascot and Xtandem within TPP version 4.4 running on the windows XP While I used the "Peptide analysis", the command line showed the error message below:
"c:\Inetpub\tpp-bin\xinteract (TPP v4.4 VUVUZELA rev 1, Build 201010121551 (MinGW)) running: "C:/Inetpub/tpp-bin/InteractParser "interact.pep.xml" "c:/ Inetpub/wwwroot/ISB/data/file/filename.pep.xml" -L"7"" <PRE> Environment variable WEBSERVER_ROOT does not exist. For Windows users, you can set this environment variable through the Advanced tab under System Properties when you right-mouse-click on your My Computer icon. Set this environment variable to your webserver's document root directory such as c:\inetpub\wwwroot for IIS or c:\website\htdocs or WebSite Pro. Exiting. command completed in 0 sec running: "C:/Inetpub/tpp-bin/PeptideProphetParser "interact.pep.xml" MINPROB=0.05" fin: error opening interact.pep.xml command "C:/Inetpub/tpp-bin/PeptideProphetParser "interact.pep.xml" MINPROB=0.05" failed: Operation not permitted command "C:/Inetpub/tpp-bin/PeptideProphetParser "interact.pep.xml" MINPROB=0.05" exited with non-zero exit code: 1 QUIT - the job is incomplete command "c:\Inetpub\tpp-bin\xinteract -Ninteract.pep.xml -p0.05 -l7 -O c:/Inetpub/wwwroot/ISB/data/F001345testlocal/F001356.pep.xml" failed: Operation not permitted Command FAILED" I have set the webserver root according to the indication of error message. It still can't work. Thank you for your help. All bests On 12月1日, 下午10時44分, catherine <[email protected]> wrote: > Dear friends, > This is the first time i post a message here. > > I was using the SEQUEST for database searching within TPP version > 4.2.1 running on windowsXP, everything was fine until the pep.xml > conversion step. However, when I was trying to submit the 60 pep.xml > files for peptideprophet, it always indicated an an "unknown error, > the job is not completed". May I know what the problem is and how i > can solve the problem? Thanks a lot for the help and support! -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
