Hi Matt, Thanks for your reply and suggestion.
I downloaded pwiz-bin-windows-x86-vc90-release-2_1_2467.tar.bz2 to get msconvert. However, when I ran the command 'msconvert my_fullscan.wiff' on the command line, I got the error msg '... requires Protein Pilot 3.0...'. Unfortunately, Protein Pilot 3.0 (trial version) doesn't seem to be available from ABI's download portal. (part # 1036426 listed on ABI's website but nothing matches it). So I probably need an alternate solution. Can you give me another pointer? Thanks, Bob On Jan 17, 2:26 pm, Matthew Chambers <[email protected]> wrote: > I don't know why mzWiff isn't writing a peaks element, but msconvert will. > > -Matt > > On 1/17/2011 11:29 AM, bobxiong wrote: > > > > > I'm using TPP v4.4 VUVUZELA rev 1, Build 201010121551 (MinGW) to > > convert wiff raw data to mzXML. The command executed in TPP was > > > c:\Inetpub\tpp-bin\mzWiff -v --mzXML -c1 -g -G --Analyst c:/Inetpub/ > > wwwroot/ISB/data/my_fullscan.wiff. > > > An excerpt of the output is shown below: > > > <scan num="1" > > msLevel="1" > > peaksCount="140" > > polarity="+" > > scanType="Q1 Scan" > > retentionTime="PT0.001S" > > lowMz="106.7" > > highMz="1206.8" > > basePeakMz="115.9" > > basePeakIntensity="3.24903e+006" > > totIonCurrent="3.06962e+007"> > > </scan> > > > I wonder if I could use some sort of advanced option (that I'm not > > aware of) to extract info (mz, intensity and retention time) for ALL > > the peaks contained in the wiff file rather than for the base peak > > only (shown above). If this is not feasible using mzWiff, are there > > other tools available to do what I needed? Any advice would be greatly > > appreciated. > > > Bob- Hide quoted text - > > - Show quoted text - -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
