Hi Matt, Thanks for your message and for the link to the new pwiz version. I have tried it (Windows XP) and it seems that the process started but aborted somewhere in the middle. The error is this time: "[...msconvert.exe] Caught unknown exception" But in the mid time, I managed to get what I wanted through a python script. So that's fine with me. Thanks again, Best, Ludovic
On Jan 31, 9:26 pm, Matthew Chambers <[email protected]> wrote: > Hi Ludovic, > > Could you try this with a recent snapshot of pwiz? > i.e.http://teamcity.labkey.org:8080/repository/download/bt77/25480:id/pwi... > > Thanks, > -Matt > > On 1/31/2011 9:43 AM, lgillet wrote: > > > > > > > > > Dear All, > > I am having problem running the command msconvert with the mass filter > > option. > > Here is the command I write: > > msconvert File001.mgf -e _out.mgf --mgf -v --filter "mzWindow > > [500,600]" > > > And here is the error message: > > ... > > writing output file: ./File001_out.mgf > > msconvert: /home/packager/BuildProjects/transproteomicpipeline/DEBS/ > > transproteomicpipeline-V4.4.1-1/src/../extern/boost_1_39_0/boost/ > > smart_ptr/shared_ptr.hpp:403: typename > > boost::detail::shared_ptr_traits<T>::reference boost::shared_ptr< > > <template-parameter-1-1> >::operator*() const [with T = > > pwiz::msdata::BinaryDataArray]: Assertion `px != 0' failed. > > Aborted > > > Note that this is happening on TPP V4.4 rev1 > > (ProteoWizard release: 2.0.1880 (TPP v4.4 VUVUZELA rev 1, Build > > 201011021211 (linux)) (2010-3-8) > > ProteoWizard MSData: 2.0.1880 (TPP v4.4 VUVUZELA rev 1, Build > > 201011021211 (linux)) (2010-3-8) > > ProteoWizard Analysis: 2.0.1875 (TPP v4.4 VUVUZELA rev 1, Build > > 201011021211 (linux)) (2010-3-8) > > Build date: Nov 2 2010 12:19:07) > > > And in windows XP (same TPP version), it just simply crashes without > > any further notice. > > > Do you have any explanation or can you reproduce this behavior on some > > of your files? > > I can post one of my files in case you think it is a "file-specific" > > thing > > > Thanks a lot in advance for your help. > > > Best, > > > Ludovic -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
