That single quote is certainly incorrect. I have fixed that, not sure if it also corrects your other issues but you should try again with r5304.
Brian On Sat, Feb 5, 2011 at 10:03 AM, Andreas Quandt <[email protected]> wrote: > dear list, > i tried to comile the r5303 from the trunk repositor but unfortunately i got > compiling errors. > here is what i did: > > svn -r 5303 co > https://sashimi.svn.sourceforge.net/svnroot/sashimi/trunk/trans_proteomic_pipeline > trans_proteomic_pipeline > > cd trans_proteomic_pipeline/src > touch Makefile.config.incl > vim Makefile.config.incl > .... > TPP_ROOT=/cluster/apps/tpp/r5303/ > TPP_WEB=/tpp/ > ## for Boost > BOOST_INCL=-I/cluster/apps/tpp/r5303/boost/ > BOOST_LIBDIR=/cluster/apps/tpp/r5303/boost/lib > BOOST_LIBSPEC=-gcc43 > #BOOST_INCL=-I/opt/boost/ > #BOOST_LIBDIR=/opt/boost/lib > #BOOST_LIBSPEC=-gcc43 > LINK=shared > LIBEXT=so > PERL_LIB_CORE=/usr/lib64/perl5/5.8.8/x86_64-linux-thread-multi/CORE > .... > make 2>&1 | tee make.log > > and here the compilation error i got: > > checking for gcc... g++ -D__LINUX__ > -DDEFAULT_TPP_INSTALL_ROOT=\"/usr/local/tpp/\" -D_FILE_OFFSET_BITS=64 > -D_LARGEFILE_SOURCE -D__INTEL__ -DINLINING -DTPPLIB -fPIC -I. > -I/cluster/apps/tpp/trans_proteomic_pipeline/src/ -I../extern/gz > > stream -I../extern/libarchive-2.2.7/libarchive > -I/cluster/apps/tpp/trans_proteomic_pipeline/src/../extern/expat-2.0.1/lib > -I/cluster/apps/tpp/trans_proteomic_pipeline/src/../extern/boost_1_39_0/boost > -I/cluster/apps/tpp/trans_proteomic_p > > ipeline/src/../extern/boost_1_39_0/ > -I/cluster/apps/tpp/trans_proteomic_pipeline/src/../extern/fann-2.0.0//src/include/ > -I/cluster/apps/tpp/trans_proteomic_pipeline/src/../extern/gsl-1.14/ > -iprefix /cluster/apps/tpp/trans_proteomic_pipe > > line/src/../extern/ProteoWizard/pwiz/ -iwithprefix pwiz/data/msdata > -iwithprefix pwiz/data > -I/cluster/apps/tpp/trans_proteomic_pipeline/src/../extern/ProteoWizard/pwiz > -iwithprefix pwiz -iwithprefix pwiz/utility/misc -iwithprefix pwiz/ut > > ility/math > -I/cluster/apps/tpp/trans_proteomic_pipeline/src/../extern/boost_1_39_0/boost > -I/cluster/apps/tpp/trans_proteomic_pipeline/src/../extern/boost_1_39_0/ > -iwithprefix libraries/boost_aux -I/cluster/apps/tpp/trans_proteomic_pipeli > > ne/src/Parsers/ramp -iwithprefix libraries/libsvm-3.0 > -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE > -DPWIZ_USER_VERSION_INFO_H=\"common/TPPVersion.h\" -Werror -Dlint > -Wformat -Wstrict-aliasing -Wno-deprecated -Wno-char-subscripts > > checking whether the C compiler works... no > > configure: error: in > `/cluster/apps/tpp/trans_proteomic_pipeline/extern/gsl-1.14': > > configure: error: C compiler cannot create executables > > See `config.log' for more details. > > make: *** > [/cluster/apps/tpp/trans_proteomic_pipeline/src/../extern/gsl-1.14/Makefile] > Error 77 > > i checked back with our system administrators and the problem does not seem > to come form the gcc (4.4.4) as gsl-1.14 compiles fine when done separately. > however our experts pointed to possible problems in the makefile (such as > the single "'") > > mkdir -p $(OBJ_ARCH)/PepcView ; \ > rm -f $(OBJ_ARCH)/PepcView/* ' \ > cp -f > Quantitation/Pepc/PepcView/GWTCompilerOutputpepcview/com.insilicos.PepcView/* > $(OBJ_ARCH)/PepcView \ > > hence, i wanted to ask you if this might be the correct answer or if there > is some other explanation that i cannot compile this version of the tpp? > many thanks for your help in advance, > andreas > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]. > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
