dear list, i tried to comile the r5303 from the trunk repositor but unfortunately i got compiling errors.
here is what i did: svn -r 5303 co https://sashimi.svn.sourceforge.net/svnroot/sashimi/trunk/trans_proteomic_pipeline trans_proteomic_pipeline cd trans_proteomic_pipeline/src touch Makefile.config.incl vim Makefile.config.incl .... TPP_ROOT=/cluster/apps/tpp/r5303/ TPP_WEB=/tpp/ ## for Boost BOOST_INCL=-I/cluster/apps/tpp/r5303/boost/ BOOST_LIBDIR=/cluster/apps/tpp/r5303/boost/lib BOOST_LIBSPEC=-gcc43 #BOOST_INCL=-I/opt/boost/ #BOOST_LIBDIR=/opt/boost/lib #BOOST_LIBSPEC=-gcc43 LINK=shared LIBEXT=so PERL_LIB_CORE=/usr/lib64/perl5/5.8.8/x86_64-linux-thread-multi/CORE .... make 2>&1 | tee make.log and here the compilation error i got: checking for gcc... g++ -D__LINUX__ -DDEFAULT_TPP_INSTALL_ROOT=\"*/usr/local/tpp/*\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D__INTEL__ -DINLINING -DTPPLIB -fPIC -I. -I/cluster/apps/tpp/trans_proteomic_pipeline/src/ -I../extern/gz stream -I../extern/libarchive-2.2.7/libarchive -I/cluster/apps/tpp/trans_proteomic_pipeline/src/../extern/expat-2.0.1/lib -I/cluster/apps/tpp/trans_proteomic_pipeline/src/../extern/boost_1_39_0/boost -I/cluster/apps/tpp/trans_proteomic_p ipeline/src/../extern/boost_1_39_0/ -I/cluster/apps/tpp/trans_proteomic_pipeline/src/..*/extern/fann-2.0.0//src/include/* -I/cluster/apps/tpp/trans_proteomic_pipeline/src/../extern/gsl-1.14/ -iprefix /cluster/apps/tpp/trans_proteomic_pipe line/src/..*/extern/ProteoWizard/pwiz/* -iwithprefix pwiz/data/msdata -iwithprefix pwiz/data -I/cluster/apps/tpp/trans_proteomic_pipeline/src/../extern/ProteoWizard/pwiz -iwithprefix pwiz -iwithprefix pwiz/utility/misc -iwithprefix pwiz/ut ility/math -I/cluster/apps/tpp/trans_proteomic_pipeline/src/../extern/boost_1_39_0/boost -I/cluster/apps/tpp/trans_proteomic_pipeline/src/../extern/boost_1_39_0/ -iwithprefix libraries/boost_aux -I/cluster/apps/tpp/trans_proteomic_pipeli ne/src/Parsers/ramp -iwithprefix libraries/libsvm-3.0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DPWIZ_USER_VERSION_INFO_H=\"common/TPPVersion.h\" -Werror -Dlint -Wformat -Wstrict-aliasing -Wno-deprecated -Wno-char-subscripts checking whether the C compiler works... no configure: error: in `/cluster/apps/tpp/trans_proteomic_pipeline/extern/gsl-1.14': configure: error: C compiler cannot create executables See `config.log' for more details. make: *** [*/cluster/apps/tpp/trans_proteomic_pipeline/src/*../extern/gsl-1.14/Makefile] Error 77 i checked back with our system administrators and the problem does not seem to come form the gcc (4.4.4) as gsl-1.14 compiles fine when done separately. however our experts pointed to possible problems in the makefile (such as the single "'") mkdir -p $(OBJ_ARCH)/PepcView ; \ rm -f $(OBJ_ARCH)*/PepcView/** ' \ cp -f Quantitation/Pepc/PepcView/GWTCompilerOutputpepcview/com.insilicos.PepcView/* $(OBJ_ARCH)/PepcView \ hence, i wanted to ask you if this might be the correct answer or if there is some other explanation that i cannot compile this version of the tpp? many thanks for your help in advance, andreas -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
