Hi Matt. I used a configuration file (-c) containing the following information
outdir=Z:\Toxikologie\MSconvert\negmzXMLfiles mzXML=true 32=true filter="analyzerType ITMS" filter="polarity negative" for the version, it is the one contained with ProteoWizard release 2.1.2596 (ProteoWizard MSdata 2.1.2595, ProteWizardAnalysis 2.1.2587). Is it the information that you need? Thanks for your help Cédric On Mar 29, 5:45 pm, Matthew Chambers <[email protected]> wrote: > What was your exactly command-line and which version of msconvert did you use? > > -Matt > > On 3/29/2011 3:07 AM, C dric wrote: > > > Hi, > > > I am using msconvert to transform my .raw file acquired on a LTQ Velos > > into mzXML file. I performed LC-MS measurements in positive/negative > > mode in a single run, therefore my files contain both ion trace (i.e., > > positive and negative). I am trying to extract from my .raw file the > > negative ion trace and convert it in mzXML (filter="polarity > > negative"). When I am doing that, msconvert ignore my filter (it wrote > > back Ignoring wrapper: ) and transform my raw data into mzXML file > > which contains the negative and positive ion trace. Does anybody know > > how to extract each ion trace separately? > > > thanks a lot for your help, C dric -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
