I highly recommend a newer version of pwiz! -Matt
On 7/27/2011 4:30 PM, DD wrote:
We have 2.0.7 file formats and the cmd line for msconvert works for mzXML and mzML. It fails on .mgf conversion. We also run MzCv which is a GUI for msconvert and it only works for mzML. The GUI still points to same cmd line msconvert so not sure why it fails but it is the same unable to open file error as below. C:\Inetpub\tpp-bin\pwiz-bin-windows-x86-vc90-1_6_1386.tar\pwiz-bin- windows-x86-v c90-1_6_1386>msconvert 16Jun201107.RAW --mzXML format: mzXML (Precision_64 [ 1000514:Precision_64 1000515:Precision_32 ], ByteO rder_LittleEndian, Compression_None) indexed="true" outputPath: . extension: .mzXML contactFilename: filters: filenames: 16Jun201107.RAW processing file: 16Jun201107.RAW writing output file: ./16Jun201107.mzXML C:\Inetpub\tpp-bin\pwiz-bin-windows-x86-vc90-1_6_1386.tar\pwiz-bin- windows-x86-v c90-1_6_1386>msconvert 16Jun201107.RAW --mgf format: MGF outputPath: . extension: .mgf contactFilename: filters: filenames: 16Jun201107.RAW processing file: 16Jun201107.RAW [ThermoRawFile] [RawFile::ctor] Unable to open file 16Jun201107.RAW Error processing file 16Jun201107.RAW
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