Done grabbed latest off site and mgf works. On Jul 27, 5:57 pm, Matthew Chambers <[email protected]> wrote: > I highly recommend a newer version of pwiz! > > -Matt > > On 7/27/2011 4:30 PM, DD wrote: > > > > > > > > > We have 2.0.7 file formats and the cmd line for msconvert works for > > mzXML and mzML. It fails on .mgf conversion. We also run MzCv which > > is a GUI for msconvert and it only works for mzML. The GUI still > > points to same cmd line msconvert so not sure why it fails but it is > > the same unable to open file error as below. > > > C:\Inetpub\tpp-bin\pwiz-bin-windows-x86-vc90-1_6_1386.tar\pwiz-bin- > > windows-x86-v > > c90-1_6_1386>msconvert 16Jun201107.RAW --mzXML > > format: mzXML (Precision_64 [ 1000514:Precision_64 > > 1000515:Precision_32 ], ByteO > > rder_LittleEndian, Compression_None) indexed="true" > > outputPath: . > > extension: .mzXML > > contactFilename: > > > filters: > > > filenames: > > 16Jun201107.RAW > > > processing file: 16Jun201107.RAW > > writing output file: ./16Jun201107.mzXML > > > C:\Inetpub\tpp-bin\pwiz-bin-windows-x86-vc90-1_6_1386.tar\pwiz-bin- > > windows-x86-v > > c90-1_6_1386>msconvert 16Jun201107.RAW --mgf > > format: MGF > > outputPath: . > > extension: .mgf > > contactFilename: > > > filters: > > > filenames: > > 16Jun201107.RAW > > > processing file: 16Jun201107.RAW > > [ThermoRawFile] [RawFile::ctor] Unable to open file 16Jun201107.RAW > > Error processing file 16Jun201107.RAW
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