This has already been addressed ... see this post by Matt: http://bit.ly/pfHA5r
On Mon, Sep 19, 2011 at 1:35 PM, Gautam Saxena <[email protected]> wrote: > Hi, > > Based on past posts, I understand that msconvert's native conversion > to mgf will NOT work for the TPP tools (eg PeptideProphet), as the mgf > "Title" lines do not conform to the format that TPP requires. As a > result, one needs the original raw or mzXML file, which then must be > parsed via mXML2Search. > > My question is: are there plans to allow msconvert to export to the > "supported mgf" format, so that we don't need to maintain two scripts > and incur the performance costs with running 2 scripts back-to-back? > > Regards, > Gautam > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]. > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
