Hi Chis,

I understand... it is frustrating... I will try it during week-end...

I am sure you have tried many things... it will be nice if you can check
these posts :
*a) Refer last part*
*
http://www.linuxquestions.org/questions/linux-software-2/apache-cgi-perl-internal-server-error-451734/
*<http://www.linuxquestions.org/questions/linux-software-2/apache-cgi-perl-internal-server-error-451734/>

b) http://encodable.com/internal_server_error/

c) http://support.discusware.com/center/resources/errors/500ftpdiag.html

Other things which I would re-check is httpd.conf settings
Check what is printed in apache server error when you get Internal server
error.

Thanks
Vishal

On Wed, Nov 9, 2011 at 2:12 PM, Chris L <linci%[email protected]>wrote:

> Dear all,
>
> Sorry for reposting the thread, but I am still having trouble
> accessing Pep3D and some other features of TPP, namely the ones that
> allow me to view my output xml files. I am running Windows XP Service
> Pack 3, TPP v4.5 RAPTURE rev 0, Apache 2.2.21 (win32), and ActivePerl
> 5.14.2. I am trying to do the TPP Demo 2009 (http://
> tools.proteomecenter.org/wiki/index.php?title=TPP_Demo2009) in the
> link provided. Here is a screenshot I get from trying to open
> interact.pep.xml at step 7 "Visualize LC-MS/MS data using Pep3D" using
> TPP's browse feature:
>
> http://farm7.static.flickr.com/6175/6264549557_34f25c2dc0_b.jpg
>
> This problem occurs for xml files and several other types of output
> files generated by TPP. However, I can view the output file
> "interact.prot.shtml" in step 10: "Protein-level validation with
> ProteinProphet" with no problem (http://farm7.static.flickr.com/
> 6104/6329812226_e184aae1d8_b.jpg). The person previously in charge of
> TPP is no longer working for the lab and could not be reached (his
> email is written on the 500 internal server error screenshot which I
> whited out), and it appears some of the settings he did may be corrupt
> (Apache, Perl, etc). I do not specialize in computing or engineering
> so I have no clue how to adjust this. Any suggestion is appreciated.
> Thank you.
>
> ps. Thanks to Vishal and a few other people for trying to help me in
> the past few weeks.
>
> Best Regards,
> Chris
>
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