Hi Vishal and Joseph, I have emailed my check_env.pl output along with error.log and httpd.conf to the group email. As far as the CGI premature end of script solution, I am not sure how to execute it as I am not knowledgeable in messing with CGIs and anything in that area. I am not sure what you mean by my apache configuration; I left most things on default. On that note, what should I have put for the Server and Domain names? I think I put "localhost" on both. The Inetpub has full permission for every user and I am logged in as the computer's administrator. There is a username called "CREATOR OWNER" (not my username) that I cannot give full permission to; not sure whether that will affect it. Thanks and sorry for not being able to utilize the information you provided.
Best Regards, Chris On Nov 11, 9:46 am, Vishal Swaroop <[email protected]> wrote: > Hi Chris, > > Yes... looks like "Premature end of script headers" is the main cause... > > Try to explore > thishttp://wiki.apache.org/httpd/FAQ#What_does_it_mean_when_my_CGIs_fail_... > > Make sure user you are trying have full access, it might be related to user > account also, also try using default guest account in TPP. > > Keep me posted, I will try to find time during week-end to explore more... > In the mean time.. > a) Please email your httpd.conf and output ofhttp://localhost:<your > port>/tpp-bin/check_env.pl to [email protected] or to the group, I > know you sent it before but it is buried in mails.... > b) How your apache is configured, I mean you are logged in to machine with > some username... and does this username have full access ? how you start > apache ? > *c) Right click Inetpub folder > Properties > In Security Tab check that > the user you have logged-in have full permission/ access* > > Thanks > Vishal > > On Thu, Nov 10, 2011 at 5:20 PM, Chris L > <linci%[email protected]>wrote: > > > > > > > > > Hi Vishal, > > > Thank you for your continuous support. I am not in a great hurry to > > have TPP working so you do not need to place this in your priority. I > > have explored those websites and they all seemed like a foreign > > language to me. I modified my httpd.conf according to website a) and > > it denied access to my test.cgi located in Apache's cgi-bin folder so > > I decided to revert the httpd.conf back to original. As I mentioned > > earlier, I was able to create and run "test.cgi" from website b) with > > no problem. Website c) mentioned something about changing the > > permission to 0755 with WS_FTP. I have downloaded that software and > > was unable to utilitze the software. Here is an excerpt of what seems > > to be the main problem from error.log: > > > [Thu Nov 10 13:47:08 2011] [error] [client 127.0.0.1] Premature end of > > script headers: PepXMLViewer.cgi, referer: > > >http://localhost:8080/tpp-bin/tpp_gui.pl?Action=display&page=filebrow... > > [Thu Nov 10 13:58:41 2011] [warn] pid file C:/Program Files/Apache > > Software Foundation/Apache2.2/logs/httpd.pid overwritten -- Unclean > > shutdown of previous Apache run? > > > The "premature end of script" part shows up constantly as I browse > > through the error log. I think it is directly related to the reason > > that I am unable to open my .xml files in Pep3D. I will try to explore > > other options meanwhile. Thanks again. > > > Best Regards, > > Chris > > > On Nov 10, 10:42 am, Vishal Swaroop <[email protected]> wrote: > > > Hi Chis, > > > > I understand... it is frustrating... I will try it during week-end... > > > > I am sure you have tried many things... it will be nice if you can check > > > these posts : > > > *a) Refer last part* > > > *http://www.linuxquestions.org/questions/linux-software-2/apache-cgi-p. > > .. > > > *< > >http://www.linuxquestions.org/questions/linux-software-2/apache-cgi-p...> > > > > b)http://encodable.com/internal_server_error/ > > > > c)http://support.discusware.com/center/resources/errors/500ftpdiag.html > > > > Other things which I would re-check is httpd.conf settings > > > Check what is printed in apache server error when you get Internal server > > > error. > > > > Thanks > > > Vishal > > > > On Wed, Nov 9, 2011 at 2:12 PM, Chris L <linci%[email protected] > > >wrote: > > > > > Dear all, > > > > > Sorry for reposting the thread, but I am still having trouble > > > > accessing Pep3D and some other features of TPP, namely the ones that > > > > allow me to view my output xml files. I am running Windows XP Service > > > > Pack 3, TPP v4.5 RAPTURE rev 0, Apache 2.2.21 (win32), and ActivePerl > > > > 5.14.2. I am trying to do the TPP Demo 2009 (http:// > > > > tools.proteomecenter.org/wiki/index.php?title=TPP_Demo2009) in the > > > > link provided. Here is a screenshot I get from trying to open > > > > interact.pep.xml at step 7 "Visualize LC-MS/MS data using Pep3D" using > > > > TPP's browse feature: > > > > >http://farm7.static.flickr.com/6175/6264549557_34f25c2dc0_b.jpg > > > > > This problem occurs for xml files and several other types of output > > > > files generated by TPP. However, I can view the output file > > > > "interact.prot.shtml" in step 10: "Protein-level validation with > > > > ProteinProphet" with no problem (http://farm7.static.flickr.com/ > > > > 6104/6329812226_e184aae1d8_b.jpg). The person previously in charge of > > > > TPP is no longer working for the lab and could not be reached (his > > > > email is written on the 500 internal server error screenshot which I > > > > whited out), and it appears some of the settings he did may be corrupt > > > > (Apache, Perl, etc). I do not specialize in computing or engineering > > > > so I have no clue how to adjust this. Any suggestion is appreciated. > > > > Thank you. > > > > > ps. Thanks to Vishal and a few other people for trying to help me in > > > > the past few weeks. > > > > > Best Regards, > > > > Chris > > > > > -- > > > > You received this message because you are subscribed to the Google > > Groups > > > > "spctools-discuss" group. > > > > To post to this group, send email to [email protected] > > . > > > > To unsubscribe from this group, send email to > > > > [email protected]. > > > > For more options, visit this group at > > > >http://groups.google.com/group/spctools-discuss?hl=en. > > > -- > > You received this message because you are subscribed to the Google Groups > > "spctools-discuss" group. > > To post to this group, send email to [email protected]. > > To unsubscribe from this group, send email to > > [email protected]. > > For more options, visit this group at > >http://groups.google.com/group/spctools-discuss?hl=en. -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. 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