Now the following problem appears Parsers/mzParser/saxmzxmlhandler.cpp: In member function ‘f_off SAXMzxmlHandler::readIndexOffset()’: Parsers/mzParser/saxmzxmlhandler.cpp:553:24: error: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Werror=unused-result] cc1plus: all warnings being treated as errors
adding "#include <stdlib.h> and "#include <stdint.h> does not help here. Thanks for your help anyway. Greets Steven On Nov 22, 7:19 pm, "hieronymus.b" <[email protected]> wrote: > thanks this did work...at least for this file... > > On Nov 22, 12:27 am, Joseph Slagel <[email protected]> > wrote: > > > > > > > > > Hieronymus, > > > Try adding "#include <stdlib.h>" to ZeroSampleFiller.hpp > > > -Joe > > > On Mon, Nov 21, 2011 at 11:37 AM, hieronymus.b > > <[email protected]>wrote: > > > > Compiling TTP on Ubuntu 11.10 gives the following error....any idea > > > how to fix it? > > > > ....... > > > -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DPWIZ_USER_VERSION_INFO_H= > > > \"common/TPPVersion.h\" -c -O2 -o /usr/local/src/TPP_4-5-0/ > > > trans_proteomic_pipeline/src/../build/Ubuntu-x86_64/ > > > ZeroSampleFiller.pwiz.o /usr/local/src/TPP_4-5-0/ > > > trans_proteomic_pipeline/src/../extern/ProteoWizard/pwiz/pwiz/analysis/ > > > common/ZeroSampleFiller.cpp > > > In file included from /usr/local/src/TPP_4-5-0/ > > > trans_proteomic_pipeline/src/../extern/ProteoWizard/pwiz/pwiz/analysis/ > > > common/ZeroSampleFiller.cpp:25:0: > > > /usr/local/src/TPP_4-5-0/trans_proteomic_pipeline/src/../extern/ > > > ProteoWizard/pwiz/pwiz/analysis/common/ZeroSampleFiller.hpp:46:22: > > > error: ‘size_t’ has not been declared > > > /usr/local/src/TPP_4-5-0/trans_proteomic_pipeline/src/../extern/ > > > ProteoWizard/pwiz/pwiz/analysis/common/ZeroSampleFiller.cpp:34:6: > > > error: prototype for ‘void > > > pwiz::analysis::ZeroSampleFiller::fill(const std::vector<double>&, > > > const std::vector<double>&, std::vector<double>&, > > > std::vector<double>&, size_t)’ does not match any in class > > > ‘pwiz::analysis::ZeroSampleFiller’ > > > /usr/local/src/TPP_4-5-0/trans_proteomic_pipeline/src/../extern/ > > > ProteoWizard/pwiz/pwiz/analysis/common/ZeroSampleFiller.hpp:44:17: > > > error: candidate is: static void > > > pwiz::analysis::ZeroSampleFiller::fill(const std::vector<double>&, > > > const std::vector<double>&, std::vector<double>&, > > > std::vector<double>&, int) > > > remake: *** [/usr/local/src/TPP_4-5-0/trans_proteomic_pipeline/src/../ > > > build/Ubuntu-x86_64/ZeroSampleFiller.pwiz.o] Error 1 > > > > #0 /usr/local/src/TPP_4-5-0/trans_proteomic_pipeline/src/../build/ > > > Ubuntu-x86_64/ZeroSampleFiller.pwiz.o at ?? > > > #1 /usr/local/src/TPP_4-5-0/trans_proteomic_pipeline/src/../build/ > > > Ubuntu-x86_64/libpwiz.a at /usr/local/src/TPP_4-5-0/ > > > trans_proteomic_pipeline/src//Makefile.pwiz.incl:75 > > > #2 xtandem at /usr/local/src/TPP_4-5-0/trans_proteomic_pipeline/src/ > > > Makefile:1102 > > > #3 all at /usr/local/src/TPP_4-5-0/trans_proteomic_pipeline/src/ > > > Makefile:344 > > > #4 default at /usr/local/src/TPP_4-5-0/trans_proteomic_pipeline/src/ > > > Makefile.incl:252 > > > > thanks steven > > > > -- > > > You received this message because you are subscribed to the Google Groups > > > "spctools-discuss" group. > > > To post to this group, send email to [email protected]. > > > To unsubscribe from this group, send email to > > > [email protected]. > > > For more options, visit this group at > > >http://groups.google.com/group/spctools-discuss?hl=en. -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
