Steven, Looks like ubuntu's version of gcc is being very strict about return values. For the time being you could add the following compile flag to the compile flags in the main TPP makefile, " -Wno-unused-result"
Here's a little sed snippet that should do the trick (for TPP 4.5.0): sed -i -e '113s/$/ -Wno-unused-result/' Makefile -Joe On Tue, Nov 22, 2011 at 10:36 AM, hieronymus.b <[email protected]>wrote: > Now the following problem appears > > Parsers/mzParser/saxmzxmlhandler.cpp: In member function ‘f_off > SAXMzxmlHandler::readIndexOffset()’: > Parsers/mzParser/saxmzxmlhandler.cpp:553:24: error: ignoring return > value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with > attribute warn_unused_result [-Werror=unused-result] > cc1plus: all warnings being treated as errors > > adding "#include <stdlib.h> and "#include <stdint.h> does not help > here. > > Thanks for your help anyway. > Greets Steven > > On Nov 22, 7:19 pm, "hieronymus.b" <[email protected]> wrote: > > thanks this did work...at least for this file... > > > > On Nov 22, 12:27 am, Joseph Slagel <[email protected]> > > wrote: > > > > > > > > > > > > > > > > > Hieronymus, > > > > > Try adding "#include <stdlib.h>" to ZeroSampleFiller.hpp > > > > > -Joe > > > > > On Mon, Nov 21, 2011 at 11:37 AM, hieronymus.b <[email protected] > >wrote: > > > > > > Compiling TTP on Ubuntu 11.10 gives the following error....any idea > > > > how to fix it? > > > > > > ....... > > > > -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE > -DPWIZ_USER_VERSION_INFO_H= > > > > \"common/TPPVersion.h\" -c -O2 -o /usr/local/src/TPP_4-5-0/ > > > > trans_proteomic_pipeline/src/../build/Ubuntu-x86_64/ > > > > ZeroSampleFiller.pwiz.o /usr/local/src/TPP_4-5-0/ > > > > > trans_proteomic_pipeline/src/../extern/ProteoWizard/pwiz/pwiz/analysis/ > > > > common/ZeroSampleFiller.cpp > > > > In file included from /usr/local/src/TPP_4-5-0/ > > > > > trans_proteomic_pipeline/src/../extern/ProteoWizard/pwiz/pwiz/analysis/ > > > > common/ZeroSampleFiller.cpp:25:0: > > > > /usr/local/src/TPP_4-5-0/trans_proteomic_pipeline/src/../extern/ > > > > ProteoWizard/pwiz/pwiz/analysis/common/ZeroSampleFiller.hpp:46:22: > > > > error: ‘size_t’ has not been declared > > > > /usr/local/src/TPP_4-5-0/trans_proteomic_pipeline/src/../extern/ > > > > ProteoWizard/pwiz/pwiz/analysis/common/ZeroSampleFiller.cpp:34:6: > > > > error: prototype for ‘void > > > > pwiz::analysis::ZeroSampleFiller::fill(const std::vector<double>&, > > > > const std::vector<double>&, std::vector<double>&, > > > > std::vector<double>&, size_t)’ does not match any in class > > > > ‘pwiz::analysis::ZeroSampleFiller’ > > > > /usr/local/src/TPP_4-5-0/trans_proteomic_pipeline/src/../extern/ > > > > ProteoWizard/pwiz/pwiz/analysis/common/ZeroSampleFiller.hpp:44:17: > > > > error: candidate is: static void > > > > pwiz::analysis::ZeroSampleFiller::fill(const std::vector<double>&, > > > > const std::vector<double>&, std::vector<double>&, > > > > std::vector<double>&, int) > > > > remake: *** > [/usr/local/src/TPP_4-5-0/trans_proteomic_pipeline/src/../ > > > > build/Ubuntu-x86_64/ZeroSampleFiller.pwiz.o] Error 1 > > > > > > #0 /usr/local/src/TPP_4-5-0/trans_proteomic_pipeline/src/../build/ > > > > Ubuntu-x86_64/ZeroSampleFiller.pwiz.o at ?? > > > > #1 /usr/local/src/TPP_4-5-0/trans_proteomic_pipeline/src/../build/ > > > > Ubuntu-x86_64/libpwiz.a at /usr/local/src/TPP_4-5-0/ > > > > trans_proteomic_pipeline/src//Makefile.pwiz.incl:75 > > > > #2 xtandem at /usr/local/src/TPP_4-5-0/trans_proteomic_pipeline/src/ > > > > Makefile:1102 > > > > #3 all at /usr/local/src/TPP_4-5-0/trans_proteomic_pipeline/src/ > > > > Makefile:344 > > > > #4 default at /usr/local/src/TPP_4-5-0/trans_proteomic_pipeline/src/ > > > > Makefile.incl:252 > > > > > > thanks steven > > > > > > -- > > > > You received this message because you are subscribed to the Google > Groups > > > > "spctools-discuss" group. > > > > To post to this group, send email to > [email protected]. > > > > To unsubscribe from this group, send email to > > > > [email protected]. > > > > For more options, visit this group at > > > >http://groups.google.com/group/spctools-discuss?hl=en. > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]. > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
