Right, so the problem was that all of the information in the pep.xml output from SpectraSt was in fact contained inside an msms summary element that was started multiple times. I wrote a script to fix this output which now takes it through peptide prophet fine EXCEPT that no probabilities are written to the file. I'm getting a bit desperate here so if anyone has any experience succesfully using SpectraST, I'd be ever so grateful for your recipe or just general advice.
-- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
