Hi, When using msconvert on ABI wiff files, it seems to suffix the converted output file with the word "-Sample". Is this intended? This suffixing does not occurr with Thermo .raw files, so why should it occur with wiff files? Here's an example output:
=========================== R:\programs\windows_programs\msconvert\msconvert.exe --filter "msLevel 2-" --mzXML --64 --mz64 --inten32 F:/JHU_NHLBI_MS_FILES/ Melanies_iTRAQ_data/wiff_files/Fraction1/Fr1_1.wiff format: mzXML (Precision_64 [ 1000514:Precision_64 1000515:Precision_32 ], ByteOrder_LittleEndian, Compression_None) indexed="true" outputPath: . extension: .mzXML contactFilename: filters: msLevel 2- filenames: F:/JHU_NHLBI_MS_FILES/Melanies_iTRAQ_data/wiff_files/Fraction1/ Fr1_1.wiff processing file: F:/JHU_NHLBI_MS_FILES/Melanies_iTRAQ_data/wiff_files/ Fraction1/Fr1_1.wiff writing output file: ./Fr1_1-Sample.mzXML ========================= The version of msconvert being used is shown below: ========================================== W:\lab1\jsmith_university_edu\Workflow_Outputs\DJ8C>R:\programs \windows_programs\msconvert\msconvert.exe --version unknown option version Please report this error to [email protected]. Attach the command output and this version information in your report: ProteoWizard release: 2.2.2997 (2011-9-19) ProteoWizard MSData: 2.2.2997 (2011-9-19) ProteoWizard Analysis: 2.2.2976 (2011-9-14) Build date: Sep 19 2011 17:00:29 =========================================== -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
