Your best options currently are using the -proteinpilot option of MS Data Converter (either MGF or
mzML export is fine) or Mascot Distiller if you have access to it. MGF is only intended for centroid
data, so I'm not sure what you mean by "processed with gaussian smoothing."
-Matt C.
On 1/24/2012 1:14 PM, Matt wrote:
Hi everyone,
I am newbie with TripleTOF MS and I have seen that the data export
format is very important to get good outputs. I have read all the
messages about TripleTOF data and msconvert. And I have many doubts.
MSConvert is very customizable (maybe too) but AB MS Converter is very
easy to use with WIFF data (but little customizable). Could anyone
tell me which is better? Is Msconvert 100% compatible with these MS
Data format? (I read several mails about this question in march of
2011)
Is it possible to export to MGF the MS data processed with gaussian
smoothing??? I have read that I can filter and export the ms data with
PeakView, is it a good option???
Thank you very much.
Matt
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