Hey everybody:

I have a bunch of LTQ-FT data with alternating MS1 scans in the IT or
FT cells. I would like to somehow separate the two kinds of data for
downstream processing. For example, have two .mzXML files with one for
even, and one for odd scans.

This is trivial if one type of scan was ms1, and one was ms2, but kind
of hard if they are both ms1. I would be happy with this conversion in
Xcaliber, during conversion in proteowizard/TPP/ReadW, or after the
fact with a script.

Any help would be greatly appreciated!

Thanks,

-Chris

PS: Proteowizard will do this for arbitrary scan numbers (just enter a
list of every other scan), but you hit the fundamental character limit
for DOS after about 2000 scans.

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